Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalo / src / clustalo-api-test.c

diff --git a/website/archive/binaries/mac/src/clustalo/src/clustalo-api-test.c b/website/archive/binaries/mac/src/clustalo/src/clustalo-api-test.c
deleted file mode 100644 (file)
index 90ae3a0..0000000
--- a/website/archive/binaries/mac/src/clustalo/src/clustalo-api-test.c
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@@ -1,102 +0,0 @@
-/* -*- mode: c; tab-width: 4; c-basic-offset: 4;  indent-tabs-mode: nil -*- */
-
-/*********************************************************************
- * Clustal Omega - Multiple sequence alignment
- *
- * Copyright (C) 2010 University College Dublin
- *
- * Clustal-Omega is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License as
- * published by the Free Software Foundation; either version 2 of the
- * License, or (at your option) any later version.
- *
- * This file is part of Clustal-Omega.
- *
- ********************************************************************/
-
-/*
- *  RCS $Id: clustalo-api-test.c 213 2011-03-11 16:10:15Z andreas $
- */
-
-
-#include <stdio.h>
-
-/* Include clustal-omega's header. That's all you need 
- *
- * If you developing in C++, use the following instead:
- * extern "C" {
- * #include "clustal-omega.h"
- * }
- */
-#include "clustal-omega.h"
-
-
-int
-main(int argc, char **argv)
-{
-    /* the multiple sequence structure */
-    mseq_t *prMSeq = NULL;
-    /* for openmp: number of threads to use */
-    int iThreads = 1;
-    /* alignment options to use */
-    opts_t rAlnOpts;
-    /* an input file */
-    char *pcSeqInfile;
-    int iAux;
-
-    /* use LOGLEVEL_QUIET to make Clustal shut up */
-    iVerbosityLevel = LOGLEVEL_INFO;
-
-    SetDefaultAlnOpts(&rAlnOpts);
-
-    InitClustalOmega(iThreads);
-
-    /* Get sequence input file name from command line
-     */
-    if (argc!=2) {
-        Fatal("Need sequence file as argument");
-    }
-    pcSeqInfile = argv[1];
-
-    /* Read sequence file
-     */
-    NewMSeq(&prMSeq);
-    if (ReadSequences(prMSeq, pcSeqInfile,
-                      SEQTYPE_UNKNOWN,
-                      INT_MAX, INT_MAX)) {
-        Fatal("Reading sequence file '%s' failed", pcSeqInfile);
-    }
-
-    /* Dump some info about the sequences
-     */
-    for (iAux=0; iAux<prMSeq->nseqs; iAux++) {
-        Info(LOGLEVEL_INFO, 
-             "Sequence no %d has the following name: %s",
-             iAux, prMSeq->sqinfo[iAux].name);
-        Info(LOGLEVEL_INFO, 
-             "Sequence no %d has the following residues: %s",
-             iAux, prMSeq->seq[iAux]);
-        /* more info can be found in prMSeq->sqinfo[iAux] */
-    }
-
-
-    /* Align the sequences without a profile (NULL)
-     */
-    if (Align(prMSeq, NULL, & rAlnOpts)) {
-        Fatal("A fatal error happended during the alignment process");
-    }
-
-
-    /* Output of final alignment to stdout (NULL) as aligned fasta/a2m
-     */
-    if (WriteAlignment(prMSeq, NULL, MSAFILE_A2M)) {
-        Fatal("Could not save alignment");
-    } 
-
-    FreeMSeq(&prMSeq);
-
-    Info(LOGLEVEL_INFO, "Successfull program exit");
-
-    return EXIT_SUCCESS;
-}
-/***   end of main()   ***/