Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalo / src / hhalign / general.h

diff --git a/website/archive/binaries/mac/src/clustalo/src/hhalign/general.h b/website/archive/binaries/mac/src/clustalo/src/hhalign/general.h
deleted file mode 100644 (file)
index b8a4a22..0000000
--- a/website/archive/binaries/mac/src/clustalo/src/hhalign/general.h
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@@ -1,101 +0,0 @@
-/* -*- mode: c; tab-width: 4; c-basic-offset: 4; indent-tabs-mode: nil -*- */
-
-/*********************************************************************
- * Clustal Omega - Multiple sequence alignment
- *
- * Copyright (C) 2010 University College Dublin
- *
- * Clustal-Omega is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License as
- * published by the Free Software Foundation; either version 2 of the
- * License, or (at your option) any later version.
- *
- * This file is part of Clustal-Omega.
- *
- ********************************************************************/
-
-/*
- * RCS $Id: general.h 247 2011-06-16 11:41:15Z fabian $
- */
-
-
-#ifndef GENERAL_H
-#define GENERAL_H
-
-
-#include "../clustal/log.h"
-
-/*
-***** Omega definitions************************************
- FS, 2010-02-19
-*/
-enum {NO = 0, YES};
-enum {BASE10 = 10};
-enum {AMINOACIDS = 20, STATE_TRANSITIONS = 7};
-enum {MAXWORD = 100, MAXLEN = 10000};
-enum {OVER_ALLOCATE = 2};
-enum {FAILURE = -1, OK};
-enum {RETURN_OK = 0, RETURN_FROM_MAC, RETURN_FROM_VITERBI, RETURN_FROM_PRINT_ALI, RETURN_FROM_RNP, RETURN_UNKNOWN};
-enum {REALLY_BIG_MEMORY_MB = 64000};
-enum {F_OFFSET = 1};
-enum {INTERN_ALN_2_HMM = 0, READ_ALN_2_HMM, READ_HMM_2_HMM, INTERN_HMM_2_HMM};
-#define UNITY 1.00
-
-/*#define MIN(a,b) ((a)<(b)?(a):(b))*/
-
-
-/* parameters passed from Clustal-Omega to hhalign; FS, r240 -> */
-typedef struct {
-
-    int iMacRamMB; /* dedicated amount of RAM for Maximum Accuracy (in MB) */
-
-} hhalign_para;
-
-typedef struct {
-  /***public***/
-  int n_display;
-  char **sname;
-  char **seq;
-  int ncons;
-  int nfirst;
-  int nss_dssp;
-  int nsa_dssp;
-  int nss_pred;
-  int nss_conf;
-  int L;
-  int N_in;
-  int N_filtered;
-  float *Neff_M;
-  float *Neff_I;
-  float *Neff_D;
-  float Neff_HMM;
-  char *longname;
-  char name[511];
-  char file[511];
-  char fam[511];
-  char sfam[511];
-  char fold[511];
-  char cl[511];
-  float lamda;
-  float mu;
-  /***private***/
-  float **f;
-  float **g;
-  float **p;
-  float **tr;
-  float **linTr;
-  char trans_lin;
-  char *ss_dssp;
-  char *sa_dssp;
-  char *ss_pred;
-  char *ss_conf;
-  char *Xcons;
-  float pav[20];
-  float pnul[20];
-  int *l;
-
-} hmm_light;
-
-
-#endif
-