+++ /dev/null
-/* -*- mode: c; tab-width: 4; c-basic-offset: 4; indent-tabs-mode: nil -*- */
-
-/*********************************************************************
- * Clustal Omega - Multiple sequence alignment
- *
- * Copyright (C) 2010 University College Dublin
- *
- * Clustal-Omega is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License as
- * published by the Free Software Foundation; either version 2 of the
- * License, or (at your option) any later version.
- *
- * This file is part of Clustal-Omega.
- *
- ********************************************************************/
-
-/*
- * RCS $Id: hhalign.h 241 2011-05-04 14:37:17Z fabian $
- */
-
-
-extern int
-hhalign(char **ppcFirstProf, int iFirstCnt, double *pdWeightsL,
- char **ppcSecndProf, int iSecndCnt, double *pdWeightsR,
- double *dScore_p, hmm_light *prHMM,
- char *pcPrealigned1, char *pcRepresent1,
- char *pcPrealigned2, char *pcRepresent2,
- hhalign_para rHhalignPara,
- int iFlag,
- char zcAux[], char zcError[]);