+++ /dev/null
-# Replaces squids own automake files
-#
-# Some useful automake documentation:
-# http://www.openismus.com/documents/linux/automake/automake.shtml
-# http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html
-
-#SUBDIRS =
-EXTRA_DIST = COPYRIGHT LICENSE 00README clustalo.README squid-1.9g.tar.gz
-#LDADD =
-
-# need DCLUSTALO here to enable Clustal specific squid patches
-# CLUSTALO is also defined in ../config.h which is included by squid.h
-# but some files do not include squid.h
-AM_CFLAGS = -DCLUSTALO -DSRE_STRICT_ANSI @AM_CFLAGS@
-
-noinst_LTLIBRARIES = libsquid.la
-
-libsquid_la_SOURCES = a2m.c aligneval.c alignio.c \
- clustal.c cluster.c \
- dayhoff.c \
- eps.c \
- file.c \
- getopt.c gki.c gki.h gsi.c gsi.h gsi64.c gsi64.h \
- hsregex.c \
- iupac.c \
- msa.c msa.h msf.c \
- phylip.c \
- revcomp.c rk.c rk.h \
- selex.c seqencode.c shuffle.c sqerror.c sqfuncs.h sqio.c squid.h squidcore.c \
- sre_ctype.c sre_math.c sre_random.c sre_random.h sre_string.c \
- ssi.c ssi.h stack.c stockholm.c stockholm.h stopwatch.c stopwatch.h \
- translate.c types.c vectorops.c \
- vectorops.h version.h \
- weight.c
-
-library_includedir=$(includedir)/clustalo/squid
-
-library_include_HEADERS = gki.h gsi64.h msa.h rk.h \
- squid.h stopwatch.h sqfuncs.h \
- sre_random.h ssi.h stockholm.h \
- vectorops.h version.h
-
-