Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalo / src / squid / stockholm.h

diff --git a/website/archive/binaries/mac/src/clustalo/src/squid/stockholm.h b/website/archive/binaries/mac/src/clustalo/src/squid/stockholm.h
deleted file mode 100644 (file)
index a9cae55..0000000
--- a/website/archive/binaries/mac/src/clustalo/src/squid/stockholm.h
+++ /dev/null
@@ -1,51 +0,0 @@
-#ifndef STOCKHOLM_H_INCLUDED
-#define STOCKHOLM_H_INCLUDED
-
-#include "gki.h"
-
-typedef struct {
-  int   *linetype;             /* e.g. STOCKHOLM_GF_LINE; always valid */
-  int   *featurecode;          /* all markup codes: e.g. STOCKHOLM_GF_ID; 
-                                  nonmarkup: always set to STOCKHOLM_UNPARSED */
-  char **featurename;          /* all unparsed markup codes: string, e.g. "ID";
-                                  all other lines: NULL */
-  int   *seqidx;               /* all GS, GR, GC, sequence lines: which sequence;
-                                  other lines: 0 */
-  int   *len;                  /* all GR, GC, sequence lines: length of text field;
-                                  other lines: 0 */
-  char **text;                 /* all unparsed nonblank lines: rest of data
-                                  other lines: NULL */
-  int    nseqalloc;            /* current nseqs allocated for in aseqs and ainfo */
-  int    nlines;               /* number of lines in this skel */
-  int    nlinealloc;           /* current # of lines allocated for in this skel */
-  int    overall_line;         /* line # in file (important in files w/ >1 ali)*/
-} alifile_skeleton;
-
-#define STOCKHOLM_GF_LINE      0
-#define STOCKHOLM_GS_LINE      1 
-#define STOCKHOLM_GC_LINE      2
-#define STOCKHOLM_GR_LINE      3
-#define STOCKHOLM_SEQ_LINE     4
-#define STOCKHOLM_BLANK_LINE   5
-#define STOCKHOLM_COMMENT_LINE 6
-
-#define STOCKHOLM_UNPARSED  0
-#define STOCKHOLM_GF_ID     1
-#define STOCKHOLM_GF_AC     2
-#define STOCKHOLM_GF_DE     3
-#define STOCKHOLM_GF_AU     4
-#define STOCKHOLM_GF_GA     5
-#define STOCKHOLM_GF_NC     6
-#define STOCKHOLM_GF_TC     7
-#define STOCKHOLM_GS_WT     100
-#define STOCKHOLM_GS_AC     101
-#define STOCKHOLM_GS_DE     102
-#define STOCKHOLM_GC_CS     200
-#define STOCKHOLM_GC_RF     201
-#define STOCKHOLM_GR_SS     300
-#define STOCKHOLM_GR_SA     301
-
-#define SKEL_NSEQLUMP       10    /* allocate for new seqs in blocks of this size */
-#define SKEL_LUMPSIZE       100           /* allocate for new lines in skel in blocks of this size */
-
-#endif /*STOCKHOLM_H_INCLUDED*/