+++ /dev/null
-# Andreas Wilm (UCD): 2007-12-10
-# Generated using the following sites
-# http://www.openismus.com/documents/linux/automake/automake.shtml
-# http://www.bioinf.uni-freiburg.de/~mmann/HowTo/automake.html
-#
-# autoconf looks for a file called configure.ac (or, previously,
-# configure.in). It then creates the configure script, based on the
-# macros which it finds. Whenever you add a macro to configure.ac,
-# you should run aclocal as well as autoconf, because aclocal scans
-# configure.ac to find which macros it should provide.
-
-
-# This is all black magic and we (as well as all reasonable
-# developers) should change to a sane system like e.g. SCons
-# http://freshmeat.net/articles/stop-the-autoconf-insanity-why-we-need-a-new-build-system
-
-
-# Andreas Wilm (UCD):
-# you will only have to change the version number here!
-# after apllying any changes you will have to run
-# $ autoreconf
-#
-AC_INIT([clustalw], [2.0.12], [clustalw@ucd.ie])
-#
-# The AC_INIT macro can take any source file as an argument. It just
-# checks that the file is there, which should, in turn, mean that the
-# source directory is there.
-# AC_INIT generates the following m4 macros, output variables and preprocessor symbols:
-# * [AC_]PACKAGE_NAME
-# * [AC_]PACKAGE_TARNAME
-# * [AC_]PACKAGE_VERSION
-# * [AC_]PACKAGE_STRING
-# * [AC_]PACKAGE_BUGREPORT
-
-
-# Detect the canonical host and target build environment
-# see e.g. http://cvs.haskell.org/darcs/ghc/configure.ac for howto use
-# AC_CANONICAL_HOST or AC_CANONICAL_TARGET?
-# AC_CANONICAL_SYSTEM will also run AC_CANONICAL_HOST and allows to use --target
-AC_CANONICAL_SYSTEM
-# DEFINES here are going to config.h and have to be the same as in clustalx.pro
-#echo "host_os $host_os"
-case $target_os in
- *linux*|*solaris*|*bsd*)
- AC_DEFINE([OS_UNIX], [1], [Host OS])
- ;;
- *darwin*)
- AC_DEFINE([OS_MAC], [1], [Host OS])
- AC_DEFINE([OS_UNIX], [1], [Host OS])
- ;;
- *cygwin*|*mingw*)
- AC_DEFINE([OS_WINDOWS], [1], [Host OS])
- ;;
- *)
- AC_MSG_WARN(["Couldn't determine target operating system. Using Unix"]);
- AC_DEFINE([OS_UNIX], [1], [Host OS])
- ;;
-esac
-echo "building for $target_os"
-
-
-# set in clustalw_version.h[.in] rather than config.h to avoid name clashes
-#AC_DEFINE_UNQUOTED(CLUSTALW_VERSION, "${PACKAGE_VERSION}", [ClustalW version])
-#AC_DEFINE_UNQUOTED(CLUSTALW_NAME, "ClustalW", [ClustalW name])
-CLUSTALW_VERSION="${PACKAGE_VERSION}"
-AC_SUBST(CLUSTALW_VERSION)
-CLUSTALW_NAME="ClustalW"
-AC_SUBST(CLUSTALW_NAME)
-
-# The AM_INIT_AUTOMAKE line adds several standard checks.
-# This macro is always needed for automake
-# Obsolete: It takes the program name and version number as arguments.
-AM_INIT_AUTOMAKE([])
-
-AC_PROG_MAKE_SET
-
-# AC_PROG_CC indicates that the source code may be in C. If the source
-# code is C++ then we also need AC_PROG_CXX.
-AC_PROG_CC
-AC_PROG_CXX
-# AC_PROG_RANLIB will allow you to build code in sub-directories into
-# temporary libraries, which make will then link in with the rest of
-# the code.
-AC_PROG_RANLIB
-# AC_PROG_INSTALL will generate an install target so that users may
-# just type 'make install' to install the software.
-AC_PROG_INSTALL
-
-# use C++ compiler and linker
-AC_LANG_CPLUSPLUS
-
-
-# Checks for header files.
-AC_HEADER_STDC
-# AC_CHECK_HEADERS([a.h b.h])
-
-# Checks for typedefs, structures, and compiler characteristics.
-AC_HEADER_STDBOOL
-AC_C_CONST
-AC_TYPE_SIZE_T
-
-
-
-# This may beincluded by your source code and provides a way for
-# people to customise the configuration for their platform, via
-# #defines. config.h.in can be generated automatically with the
-# autoheader tool. However, you need a stamp-h file in your project
-# to ensure that automake regenerates config.h from config.h.in. Type
-# 'touch stamp-h' to add this file to your project.
-# Andreas Wilm: standard would be config.h but let's avoid conflicts with
-AM_CONFIG_HEADER(src/config.h)
-
-AC_FUNC_MALLOC
-
-# enable hashing if requested (--with-mhash)
-# will set HAVE_MHASH_H only
-AC_ARG_WITH([mhash],
- [AS_HELP_STRING([--with-mhash],
- [Enable mhash support in stats])],
- [with_mhash=$withval],
- [with_mhash=no])
-if test "$with_mhash" = "yes"; then
- AC_CHECK_LIB([mhash], [mhash_init], ,
- [AC_MSG_ERROR([mhash lib not found])])
- AC_CHECK_HEADERS([mhash.h], ,
- [AC_MSG_ERROR([mhash header not found])])
-
-fi
-
-
-# AC_OUTPUT indicates the name of the Makefile which will be generated.
-### AC_CONFIG_FILES([ Makefile ])
-AC_OUTPUT(Makefile m4/Makefile src/Makefile src/clustalw_version.h)
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