+++ /dev/null
-UnRootedClusterTree.o UnRootedClusterTree.o: \
- tree/UnRootedClusterTree.cpp config.h tree/UnRootedClusterTree.h \
- tree/ClusterTree.h /usr/include/c++/4.2.1/fstream \
- /usr/include/c++/4.2.1/istream /usr/include/c++/4.2.1/ios \
- /usr/include/c++/4.2.1/iosfwd \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++config.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/os_defines.h \
- /usr/include/unistd.h /usr/include/_types.h /usr/include/sys/_types.h \
- /usr/include/sys/cdefs.h /usr/include/machine/_types.h \
- /usr/include/i386/_types.h /usr/include/sys/unistd.h \
- /usr/include/sys/select.h /usr/include/sys/appleapiopts.h \
- /usr/include/sys/_structs.h /usr/include/sys/_select.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/cpu_defines.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++locale.h \
- /usr/include/c++/4.2.1/clocale /usr/include/locale.h \
- /usr/include/_locale.h /usr/include/c++/4.2.1/cstring \
- /usr/include/c++/4.2.1/cstddef \
- /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stddef.h \
- /usr/include/string.h /usr/include/c++/4.2.1/cstdio \
- /usr/include/stdio.h /usr/include/c++/4.2.1/cstdarg \
- /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stdarg.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++io.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr-default.h \
- /usr/include/pthread.h /usr/include/pthread_impl.h /usr/include/sched.h \
- /usr/include/time.h /usr/include/_structs.h \
- /usr/include/c++/4.2.1/cctype /usr/include/ctype.h \
- /usr/include/runetype.h /usr/include/c++/4.2.1/bits/stringfwd.h \
- /usr/include/c++/4.2.1/bits/postypes.h /usr/include/c++/4.2.1/cwchar \
- /usr/include/c++/4.2.1/ctime /usr/include/wchar.h \
- /usr/include/_wctype.h \
- /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stdint.h \
- /usr/include/c++/4.2.1/bits/functexcept.h \
- /usr/include/c++/4.2.1/exception_defines.h \
- /usr/include/c++/4.2.1/exception \
- /usr/include/c++/4.2.1/bits/char_traits.h \
- /usr/include/c++/4.2.1/bits/stl_algobase.h \
- /usr/include/c++/4.2.1/climits \
- /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/limits.h \
- /usr/lib/gcc/i686-apple-darwin10/4.2.1/include/syslimits.h \
- /usr/include/limits.h /usr/include/machine/limits.h \
- /usr/include/i386/limits.h /usr/include/i386/_limits.h \
- /usr/include/sys/syslimits.h /usr/include/c++/4.2.1/cstdlib \
- /usr/include/stdlib.h /usr/include/Availability.h \
- /usr/include/AvailabilityInternal.h /usr/include/sys/wait.h \
- /usr/include/sys/signal.h /usr/include/machine/signal.h \
- /usr/include/i386/signal.h /usr/include/i386/_structs.h \
- /usr/include/machine/_structs.h /usr/include/mach/i386/_structs.h \
- /usr/include/sys/resource.h /usr/include/machine/endian.h \
- /usr/include/i386/endian.h /usr/include/sys/_endian.h \
- /usr/include/libkern/_OSByteOrder.h \
- /usr/include/libkern/i386/_OSByteOrder.h /usr/include/alloca.h \
- /usr/include/machine/types.h /usr/include/i386/types.h \
- /usr/include/i386/_types.h /usr/include/c++/4.2.1/bits/stl_pair.h \
- /usr/include/c++/4.2.1/bits/cpp_type_traits.h \
- /usr/include/c++/4.2.1/ext/type_traits.h /usr/include/c++/4.2.1/utility \
- /usr/include/c++/4.2.1/bits/stl_relops.h \
- /usr/include/c++/4.2.1/bits/stl_iterator_base_types.h \
- /usr/include/c++/4.2.1/bits/stl_iterator_base_funcs.h \
- /usr/include/c++/4.2.1/bits/concept_check.h \
- /usr/include/c++/4.2.1/bits/stl_iterator.h \
- /usr/include/c++/4.2.1/debug/debug.h \
- /usr/include/c++/4.2.1/bits/localefwd.h \
- /usr/include/c++/4.2.1/bits/ios_base.h \
- /usr/include/c++/4.2.1/ext/atomicity.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/atomic_word.h \
- /usr/include/c++/4.2.1/bits/locale_classes.h \
- /usr/include/c++/4.2.1/string /usr/include/c++/4.2.1/memory \
- /usr/include/c++/4.2.1/bits/allocator.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++allocator.h \
- /usr/include/c++/4.2.1/ext/new_allocator.h /usr/include/c++/4.2.1/new \
- /usr/include/c++/4.2.1/bits/stl_construct.h \
- /usr/include/c++/4.2.1/bits/stl_uninitialized.h \
- /usr/include/c++/4.2.1/bits/stl_raw_storage_iter.h \
- /usr/include/c++/4.2.1/limits \
- /usr/include/c++/4.2.1/bits/ostream_insert.h \
- /usr/include/c++/4.2.1/bits/stl_function.h \
- /usr/include/c++/4.2.1/bits/basic_string.h \
- /usr/include/c++/4.2.1/algorithm /usr/include/c++/4.2.1/bits/stl_algo.h \
- /usr/include/c++/4.2.1/bits/stl_heap.h \
- /usr/include/c++/4.2.1/bits/stl_tempbuf.h \
- /usr/include/c++/4.2.1/bits/basic_string.tcc \
- /usr/include/c++/4.2.1/streambuf \
- /usr/include/c++/4.2.1/bits/streambuf.tcc \
- /usr/include/c++/4.2.1/bits/basic_ios.h \
- /usr/include/c++/4.2.1/bits/streambuf_iterator.h \
- /usr/include/c++/4.2.1/bits/locale_facets.h \
- /usr/include/c++/4.2.1/cwctype /usr/include/wctype.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_base.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_inline.h \
- /usr/include/c++/4.2.1/bits/codecvt.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/time_members.h \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/messages_members.h \
- /usr/include/c++/4.2.1/bits/basic_ios.tcc \
- /usr/include/c++/4.2.1/bits/istream.tcc /usr/include/c++/4.2.1/locale \
- /usr/include/c++/4.2.1/bits/locale_facets.tcc \
- /usr/include/c++/4.2.1/typeinfo /usr/include/c++/4.2.1/ostream \
- /usr/include/c++/4.2.1/bits/ostream.tcc \
- /usr/include/c++/4.2.1/i686-apple-darwin10/bits/basic_file.h \
- /usr/include/c++/4.2.1/bits/fstream.tcc /usr/include/c++/4.2.1/iostream \
- /usr/include/c++/4.2.1/vector /usr/include/c++/4.2.1/bits/stl_vector.h \
- /usr/include/c++/4.2.1/bits/stl_bvector.h \
- /usr/include/c++/4.2.1/bits/vector.tcc tree/../alignment/Alignment.h \
- /usr/include/c++/4.2.1/iomanip /usr/include/c++/4.2.1/functional \
- /usr/include/c++/4.2.1/stdexcept tree/../alignment/Sequence.h \
- tree/../alignment/../general/userparams.h \
- tree/../alignment/../general/UserParameters.h \
- tree/../alignment/../general/utils.h \
- tree/../alignment/../general/Utility.h /usr/include/errno.h \
- /usr/include/sys/errno.h tree/../alignment/../general/clustalw.h \
- tree/../alignment/../general/general.h \
- tree/../alignment/../general/Array2D.h \
- tree/../alignment/../general/SquareMat.h \
- tree/../alignment/../general/SymMatrix.h /usr/include/c++/4.2.1/cmath \
- /usr/include/math.h /usr/include/architecture/i386/math.h \
- /usr/include/c++/4.2.1/bits/cmath.tcc \
- tree/../alignment/../general/utils.h \
- tree/../alignment/../substitutionMatrix/globalmatrix.h \
- tree/../alignment/../substitutionMatrix/SubMatrix.h \
- tree/../alignment/../substitutionMatrix/../general/clustalw.h \
- tree/../alignment/../substitutionMatrix/../general/userparams.h \
- tree/../alignment/../substitutionMatrix/../general/utils.h \
- tree/../alignment/../substitutionMatrix/../general/Array2D.h \
- tree/../alignment/../general/VectorOutOfRange.h \
- tree/../alignment/../general/SequenceNotFoundException.h tree/NJTree.h \
- tree/ClusterTreeAlgorithm.h tree/../general/clustalw.h \
- tree/../general/userparams.h tree/ClusterTreeOutput.h \
- tree/../general/OutputFile.h tree/../general/utils.h \
- tree/RandomGenerator.h /usr/include/c++/4.2.1/sstream \
- /usr/include/c++/4.2.1/bits/sstream.tcc
-
-config.h:
-
-tree/UnRootedClusterTree.h:
-
-tree/ClusterTree.h:
-
-/usr/include/c++/4.2.1/fstream:
-
-/usr/include/c++/4.2.1/istream:
-
-/usr/include/c++/4.2.1/ios:
-
-/usr/include/c++/4.2.1/iosfwd:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++config.h:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/os_defines.h:
-
-/usr/include/unistd.h:
-
-/usr/include/_types.h:
-
-/usr/include/sys/_types.h:
-
-/usr/include/sys/cdefs.h:
-
-/usr/include/machine/_types.h:
-
-/usr/include/i386/_types.h:
-
-/usr/include/sys/unistd.h:
-
-/usr/include/sys/select.h:
-
-/usr/include/sys/appleapiopts.h:
-
-/usr/include/sys/_structs.h:
-
-/usr/include/sys/_select.h:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/cpu_defines.h:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++locale.h:
-
-/usr/include/c++/4.2.1/clocale:
-
-/usr/include/locale.h:
-
-/usr/include/_locale.h:
-
-/usr/include/c++/4.2.1/cstring:
-
-/usr/include/c++/4.2.1/cstddef:
-
-/usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stddef.h:
-
-/usr/include/string.h:
-
-/usr/include/c++/4.2.1/cstdio:
-
-/usr/include/stdio.h:
-
-/usr/include/c++/4.2.1/cstdarg:
-
-/usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stdarg.h:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++io.h:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr.h:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/gthr-default.h:
-
-/usr/include/pthread.h:
-
-/usr/include/pthread_impl.h:
-
-/usr/include/sched.h:
-
-/usr/include/time.h:
-
-/usr/include/_structs.h:
-
-/usr/include/c++/4.2.1/cctype:
-
-/usr/include/ctype.h:
-
-/usr/include/runetype.h:
-
-/usr/include/c++/4.2.1/bits/stringfwd.h:
-
-/usr/include/c++/4.2.1/bits/postypes.h:
-
-/usr/include/c++/4.2.1/cwchar:
-
-/usr/include/c++/4.2.1/ctime:
-
-/usr/include/wchar.h:
-
-/usr/include/_wctype.h:
-
-/usr/lib/gcc/i686-apple-darwin10/4.2.1/include/stdint.h:
-
-/usr/include/c++/4.2.1/bits/functexcept.h:
-
-/usr/include/c++/4.2.1/exception_defines.h:
-
-/usr/include/c++/4.2.1/exception:
-
-/usr/include/c++/4.2.1/bits/char_traits.h:
-
-/usr/include/c++/4.2.1/bits/stl_algobase.h:
-
-/usr/include/c++/4.2.1/climits:
-
-/usr/lib/gcc/i686-apple-darwin10/4.2.1/include/limits.h:
-
-/usr/lib/gcc/i686-apple-darwin10/4.2.1/include/syslimits.h:
-
-/usr/include/limits.h:
-
-/usr/include/machine/limits.h:
-
-/usr/include/i386/limits.h:
-
-/usr/include/i386/_limits.h:
-
-/usr/include/sys/syslimits.h:
-
-/usr/include/c++/4.2.1/cstdlib:
-
-/usr/include/stdlib.h:
-
-/usr/include/Availability.h:
-
-/usr/include/AvailabilityInternal.h:
-
-/usr/include/sys/wait.h:
-
-/usr/include/sys/signal.h:
-
-/usr/include/machine/signal.h:
-
-/usr/include/i386/signal.h:
-
-/usr/include/i386/_structs.h:
-
-/usr/include/machine/_structs.h:
-
-/usr/include/mach/i386/_structs.h:
-
-/usr/include/sys/resource.h:
-
-/usr/include/machine/endian.h:
-
-/usr/include/i386/endian.h:
-
-/usr/include/sys/_endian.h:
-
-/usr/include/libkern/_OSByteOrder.h:
-
-/usr/include/libkern/i386/_OSByteOrder.h:
-
-/usr/include/alloca.h:
-
-/usr/include/machine/types.h:
-
-/usr/include/i386/types.h:
-
-/usr/include/i386/_types.h:
-
-/usr/include/c++/4.2.1/bits/stl_pair.h:
-
-/usr/include/c++/4.2.1/bits/cpp_type_traits.h:
-
-/usr/include/c++/4.2.1/ext/type_traits.h:
-
-/usr/include/c++/4.2.1/utility:
-
-/usr/include/c++/4.2.1/bits/stl_relops.h:
-
-/usr/include/c++/4.2.1/bits/stl_iterator_base_types.h:
-
-/usr/include/c++/4.2.1/bits/stl_iterator_base_funcs.h:
-
-/usr/include/c++/4.2.1/bits/concept_check.h:
-
-/usr/include/c++/4.2.1/bits/stl_iterator.h:
-
-/usr/include/c++/4.2.1/debug/debug.h:
-
-/usr/include/c++/4.2.1/bits/localefwd.h:
-
-/usr/include/c++/4.2.1/bits/ios_base.h:
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-/usr/include/c++/4.2.1/ext/atomicity.h:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/atomic_word.h:
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-/usr/include/c++/4.2.1/bits/locale_classes.h:
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-/usr/include/c++/4.2.1/string:
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-/usr/include/c++/4.2.1/memory:
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-/usr/include/c++/4.2.1/bits/allocator.h:
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-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/c++allocator.h:
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-/usr/include/c++/4.2.1/ext/new_allocator.h:
-
-/usr/include/c++/4.2.1/new:
-
-/usr/include/c++/4.2.1/bits/stl_construct.h:
-
-/usr/include/c++/4.2.1/bits/stl_uninitialized.h:
-
-/usr/include/c++/4.2.1/bits/stl_raw_storage_iter.h:
-
-/usr/include/c++/4.2.1/limits:
-
-/usr/include/c++/4.2.1/bits/ostream_insert.h:
-
-/usr/include/c++/4.2.1/bits/stl_function.h:
-
-/usr/include/c++/4.2.1/bits/basic_string.h:
-
-/usr/include/c++/4.2.1/algorithm:
-
-/usr/include/c++/4.2.1/bits/stl_algo.h:
-
-/usr/include/c++/4.2.1/bits/stl_heap.h:
-
-/usr/include/c++/4.2.1/bits/stl_tempbuf.h:
-
-/usr/include/c++/4.2.1/bits/basic_string.tcc:
-
-/usr/include/c++/4.2.1/streambuf:
-
-/usr/include/c++/4.2.1/bits/streambuf.tcc:
-
-/usr/include/c++/4.2.1/bits/basic_ios.h:
-
-/usr/include/c++/4.2.1/bits/streambuf_iterator.h:
-
-/usr/include/c++/4.2.1/bits/locale_facets.h:
-
-/usr/include/c++/4.2.1/cwctype:
-
-/usr/include/wctype.h:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_base.h:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/ctype_inline.h:
-
-/usr/include/c++/4.2.1/bits/codecvt.h:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/time_members.h:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/messages_members.h:
-
-/usr/include/c++/4.2.1/bits/basic_ios.tcc:
-
-/usr/include/c++/4.2.1/bits/istream.tcc:
-
-/usr/include/c++/4.2.1/locale:
-
-/usr/include/c++/4.2.1/bits/locale_facets.tcc:
-
-/usr/include/c++/4.2.1/typeinfo:
-
-/usr/include/c++/4.2.1/ostream:
-
-/usr/include/c++/4.2.1/bits/ostream.tcc:
-
-/usr/include/c++/4.2.1/i686-apple-darwin10/bits/basic_file.h:
-
-/usr/include/c++/4.2.1/bits/fstream.tcc:
-
-/usr/include/c++/4.2.1/iostream:
-
-/usr/include/c++/4.2.1/vector:
-
-/usr/include/c++/4.2.1/bits/stl_vector.h:
-
-/usr/include/c++/4.2.1/bits/stl_bvector.h:
-
-/usr/include/c++/4.2.1/bits/vector.tcc:
-
-tree/../alignment/Alignment.h:
-
-/usr/include/c++/4.2.1/iomanip:
-
-/usr/include/c++/4.2.1/functional:
-
-/usr/include/c++/4.2.1/stdexcept:
-
-tree/../alignment/Sequence.h:
-
-tree/../alignment/../general/userparams.h:
-
-tree/../alignment/../general/UserParameters.h:
-
-tree/../alignment/../general/utils.h:
-
-tree/../alignment/../general/Utility.h:
-
-/usr/include/errno.h:
-
-/usr/include/sys/errno.h:
-
-tree/../alignment/../general/clustalw.h:
-
-tree/../alignment/../general/general.h:
-
-tree/../alignment/../general/Array2D.h:
-
-tree/../alignment/../general/SquareMat.h:
-
-tree/../alignment/../general/SymMatrix.h:
-
-/usr/include/c++/4.2.1/cmath:
-
-/usr/include/math.h:
-
-/usr/include/architecture/i386/math.h:
-
-/usr/include/c++/4.2.1/bits/cmath.tcc:
-
-tree/../alignment/../general/utils.h:
-
-tree/../alignment/../substitutionMatrix/globalmatrix.h:
-
-tree/../alignment/../substitutionMatrix/SubMatrix.h:
-
-tree/../alignment/../substitutionMatrix/../general/clustalw.h:
-
-tree/../alignment/../substitutionMatrix/../general/userparams.h:
-
-tree/../alignment/../substitutionMatrix/../general/utils.h:
-
-tree/../alignment/../substitutionMatrix/../general/Array2D.h:
-
-tree/../alignment/../general/VectorOutOfRange.h:
-
-tree/../alignment/../general/SequenceNotFoundException.h:
-
-tree/NJTree.h:
-
-tree/ClusterTreeAlgorithm.h:
-
-tree/../general/clustalw.h:
-
-tree/../general/userparams.h:
-
-tree/ClusterTreeOutput.h:
-
-tree/../general/OutputFile.h:
-
-tree/../general/utils.h:
-
-tree/RandomGenerator.h:
-
-/usr/include/c++/4.2.1/sstream:
-
-/usr/include/c++/4.2.1/bits/sstream.tcc:
git://source.jalview.org / jabaws.git / blobdiff