Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / alignment / Sequence.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/alignment/Sequence.h b/website/archive/binaries/mac/src/clustalw/src/alignment/Sequence.h
deleted file mode 100644 (file)
index ed72ecc..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/alignment/Sequence.h
+++ /dev/null
@@ -1,59 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-/**
- * This class contains the sequence information. It should also contain
- * the sequence name, and the encoded version.
- * A vector of Sequences is passed to the Alignment object to set it up.
- * CHANGES:
- * Mark 22-1-2007: Added a unique sequence identifier to help with correct output
- * order of sequences.   
- */
- 
-#ifndef SEQUENCE_H
-#define SEQUENCE_H
-
-#include <vector>
-#include <string>
-#include "../general/userparams.h"
-#include "../general/utils.h"
-
-namespace clustalw
-{
-
-class Sequence
-{
-    public:
-        /* Functions */
-        Sequence(std::string& seq, std::string& name, std::string& title);
-        Sequence(std::string& seq, std::string& name, std::string& title, 
-                 unsigned long id);
-        Sequence(std::vector<int>* encodedSequence, std::string& name, std::string& title, 
-                 unsigned long id);
-        void encodeSequence();
-        void printSequence();
-        std::vector<int>* getSequence();
-        bool isEmpty();
-        std::string getName();
-        std::string getTitle();
-        bool checkDNAFlag();
-        unsigned long getIdentifier(){return identifier;}
-        /* Attributes */
-
-    private:
-        /* Functions */
-        void checkIntegrity();
-        void copyStringIntoVector(std::vector<char>* _vectorTo, std::string* _stringFrom);
-        
-        /* Attributes */
-        std::vector<char> _sequence;
-        std::vector<int> _encodedSequence;
-        std::string _name;
-        std::string _title;
-        unsigned long identifier;
-};
-
-}
-#endif