Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / fileInput / FileParser.cpp

diff --git a/website/archive/binaries/mac/src/clustalw/src/fileInput/FileParser.cpp b/website/archive/binaries/mac/src/clustalw/src/fileInput/FileParser.cpp
deleted file mode 100644 (file)
index 6fb138a..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/fileInput/FileParser.cpp
+++ /dev/null
@@ -1,103 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-/**
- * 10-02-07,Nigel Brown(EMBL): Removed delimiter and findDelimiter()
- * members, as functionality now handled by the stream class.
- */
-
-#ifdef HAVE_CONFIG_H
-    #include "config.h"
-#endif
-#include "FileParser.h"
-const char LF = 0x0a;  //linefeed
-const char CR = 0x0d;  //carriage return
-
-
-
-
-
-namespace clustalw
-{
-FileParser::FileParser()
-{
-    parseExitCode = OK;
-}
-
-FileParser::~FileParser()
-{
-    // Dont do anything!!!!
-}
-
-
-void FileParser::fillCharTab(void)
-{
-    register int i;
-    register char c;
-
-    for (i = 0; i < 128; chartab[i++] = 0)
-        ;
-    for (i = 0; i <= userParameters->getMaxAA() + 1; i++)
-    {
-        c = userParameters->getAminoAcidCode(i);
-        chartab[(int)c] = chartab[tolower(c)] = c;
-    }
-}
-
-void FileParser::freeFileResources(InFileStream* filePtr)
-{
-    if(filePtr != 0)
-    {
-        filePtr->close();
-        delete filePtr;
-        filePtr = 0;    
-    }
-}
-
-
-char FileParser::getDelimiter(string filename)
-{
-    ifstream in;
-    int type = 0;
-    char delim;
-
-    in.open(filename.c_str(), ios::in);
-    in.seekg(0, ios::beg);
-
-    //look for CR or LF or CRLF (or LFCR)
-    if (in.is_open()) {
-        char c;
-        while (in.get(c)) {
-            if (c == CR)
-                type |= 1;
-            else if (c == LF)
-                type |= 2;
-            else if (type)
-                break;
-        }
-    }
-    in.close();
-
-    switch (type) {
-        case 1:
-            //cout << "file is Mac System 9" << endl;
-            delim = '\r';
-            break;
-        case 2:
-            //cout << "file is UNIX" << endl;
-            delim = '\n';
-            break;
-        case 3:
-            //cout << "file is DOS" << endl;
-            delim = '\n';
-            break;
-        default: //short or empty file
-            //cout << "file is UNIX (default)" << endl;
-            delim = '\n';
-    }
-    return delim;
-}
-
-}