Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / fileInput / FileParser.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/fileInput/FileParser.h b/website/archive/binaries/mac/src/clustalw/src/fileInput/FileParser.h
deleted file mode 100644 (file)
index 0a59c1d..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/fileInput/FileParser.h
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@@ -1,63 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-/** The aim of this class is to return one sequence at a time.
- * Note that the file must be open when it is passed to the FileParser.
- * The parser does not know the name of the file to open. Only the filereader knows.
- *
- * Changes: 
- *
- * Mark 24-1-2007. I added the function findDelimiter to determine if '\r' or '\n' 
- * will be used as the line delimiter when parsing the file.
- *
- * 10-02-07,Nigel Brown(EMBL): Removed delimiter and findDelimiter()
- * members, as functionality now handled by the stream class.
- */
-#ifndef FILEPARSER_H
-#define FILEPARSER_H
-
-#include <ctype.h>
-#include "../alignment/Sequence.h"
-#include "../general/userparams.h"
-#include <iostream>
-#include "InFileStream.h"
-
-namespace clustalw
-{
- 
-class FileParser
-{
-    public:
-        /* Functions */
-        FileParser();
-        virtual ~FileParser();
-        virtual vector<Sequence> getSeqRange(int firstSeq, int num, string *offendingSeq) = 0;
-        virtual Sequence getSeq(int seqNum, string *offendingSeq=NULL) = 0;
-        virtual int countSeqs() = 0; // VIRTUAL 
-        virtual void getSecStructure(vector<char>& gapPenaltyMask, 
-                                     vector<char>& secStructMask,
-                                     string& secStructName, int &structPenalties, int length) = 0;
-        void fillCharTab(void);
-        char getDelimiter(string filename);
-        /* Attributes */
-        char chartab[128];
-        int getParseExitCode() { return parseExitCode; };
-        
-    protected:
-        void freeFileResources(InFileStream* filePtr);
-        InFileStream* _fileIn;
-        int parseExitCode; // reason for returning empty sequence
-                           // vector; same as used in FileReader
-
-    private:
-        /* Functions */
-
-        /* Attributes */
-
-};
-
-}
-#endif
-