Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / general / Utility.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/general/Utility.h b/website/archive/binaries/mac/src/clustalw/src/general/Utility.h
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+/**
+ * Author: Mark Larkin
+ * 
+ * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
+ */
+#ifndef UTILITY_H
+#define UTILITY_H
+
+#include <cstdlib>
+#include <stdio.h>
+#include <string.h>
+#include <errno.h>
+#include <stdarg.h>
+#include <ctype.h>
+#include "clustalw.h"
+class QLabel;
+using namespace std;
+
+namespace clustalw
+{
+class Utility
+{
+    public:
+        Utility();
+       virtual ~Utility(){};
+
+        char* rTrim(char *str);
+        void rTrim(string *str);
+        char* blankToUnderscore(char *str);
+        string blankToUnderscore(string str);
+        void getStr(string instr, string& outstr);
+        char getChoice(string instr);
+        double getReal(const char *instr, double minx, double maxx, double def);
+        int getInt(const char *instr,int minx,int maxx, int def);
+        unsigned long getUniqueSequenceIdentifier();
+        bool lineType(char *line, const char *code);
+
+        bool blankLine(char *line);
+        
+        void getPath(string str, string *path);
+        
+        virtual char promptForYesNo(char *title, const char *prompt);
+        virtual char promptForYesNo(const char *title, const char *prompt);
+        virtual void error( char *msg,...);
+        virtual void error( const char *msg,...);
+        virtual void warning( char *msg,...);
+        virtual void warning( const char *msg,...);
+        virtual void info( char *msg,...);
+        virtual void info( const char *msg,...);
+        virtual void myname( char *myname );
+        template <class T> T MIN(T x, T y){if (x <= y){return x;}return y;}
+        template <class T> T MAX(T x, T y){if (x >= y){return x;}return y;}
+        // Note the following function will never be used from this class. It is for the
+        // QT version. I need it here so that I can add the function to QTUtility.
+        virtual void setInfoLabelPtr(QLabel* ptrToLabelObj);
+        bool isNumeric(char ch);
+        double average(std::vector<double>& v);
+        double stdDev(std::vector<double>& v);
+        double median(std::vector<double> v);
+        /* Attributes */
+        void beQuiet(bool b) {quiet=b;};
+        
+    private:
+        /* Functions */
+
+
+        /* Attributes */
+        bool quiet;
+
+};
+}
+#endif
+