Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / interface / InteractiveMenu.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/interface/InteractiveMenu.h b/website/archive/binaries/mac/src/clustalw/src/interface/InteractiveMenu.h
deleted file mode 100644 (file)
index 5b367b5..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/interface/InteractiveMenu.h
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@@ -1,71 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-/**
- * Mark Larkin 12 Dec 2005.
- * Interactive menu class. It uses the object userParameters for
- * all the session variables.
- */
-#ifndef INTERACTIVEMENU_H
-#define INTERACTIVEMENU_H
-
-#include <string>
-#include "../Clustal.h"
-#include "../general/clustalw.h"
-#include "../general/userparams.h"
-#include "../general/utils.h"
-#include "../substitutionMatrix/globalmatrix.h"
-
-namespace clustalw
-{
-
-using namespace std;
-
-class InteractiveMenu
-{
-    public:
-        /* Functions */
-        InteractiveMenu(); 
-        ~InteractiveMenu();
-        void mainMenu();
-
-        /* Attributes */
-
-    private:
-        /* Functions */
-        void doSystem();
-        void multipleAlignMenu();
-        void profileAlignMenu();
-        void ssOptionsMenu();
-        int secStrOutputOptions();
-        void phylogeneticTreeMenu();
-        void treeFormatOptionsMenu();
-        void formatOptionsMenu(); 
-        void pairwiseMenu();
-        void multiMenu();
-        void gapPenaltiesMenu();
-        int readMatrix(int alignResidueType, int alignType, MatMenu menu);
-        void clusteringAlgorithmMenu();
-        void iterationMenu();
-         
-        /* Attributes */
-        Clustal* clustalObj;
-        string phylipName;
-        string clustalName;
-        string distName;
-        string nexusName;
-        //string fasta_name;
-        string p1TreeName;
-        string p2TreeName;
-        string secStructOutputTxt[4]; // Changed to a string array
-        string lin1;
-        MatMenu dnaMatrixMenu;
-        MatMenu matrixMenu;
-        MatMenu pwMatrixMenu;
-        char choice;
-};
-}
-#endif
-