Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / main.cpp

diff --git a/website/archive/binaries/mac/src/clustalw/src/main.cpp b/website/archive/binaries/mac/src/clustalw/src/main.cpp
deleted file mode 100644 (file)
index e7ab212..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/main.cpp
+++ /dev/null
@@ -1,94 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-#ifdef HAVE_CONFIG_H
-    #include "config.h"
-#endif
-#include <iostream>
-#include "alignment/Alignment.h"
-#include "alignment/Sequence.h"
-#include "general/clustalw.h"
-#include "general/UserParameters.h"
-#include "substitutionMatrix/SubMatrix.h"
-#include "general/Utility.h"
-#include "fileInput/FileReader.h"
-#include "interface/InteractiveMenu.h"
-#include "interface/CommandLineParser.h"
-#include "general/DebugLog.h"
-#include "general/ClustalWResources.h"
-#include "general/Stats.h"
-#include <ctime>
-namespace clustalw
-{ 
-    UserParameters* userParameters;
-    Utility* utilityObject;
-    SubMatrix *subMatrix; 
-    DebugLog* logObject;
-    Stats* statsObject;
-}
-using namespace std;
-using namespace clustalw;
-
-int main(int argc, char **argv)
-{      
-    userParameters = new UserParameters(false);
-    utilityObject = new Utility();   
-    subMatrix = new SubMatrix();
-    statsObject = new Stats();
-    ClustalWResources *resources = ClustalWResources::Instance();
-    resources->setPathToExecutable(string(argv[0]));
-    userParameters->setDisplayInfo(true);
-
-
-    
-    //userParameters->setDebug(5);       
-    #if DEBUGFULL    
-        if(DEBUGLOG)
-        {
-            cout << "debugging is on\n\n\n";
-            logObject = new DebugLog("logfile.txt");
-            logObject->logMsg("Loggin is on!");
-        }
-    #endif
-
-    if (argc > 1)
-    {    
-        //time_t start, end;
-        //double dif;
-        //start = time (NULL);
-        //userParameters->setDisplayInfo(false);        
-        vector<string> args;
-        for (int i = 1; i < argc; ++i)
-        {
-            args.push_back(argv[i]);
-        }
-        CommandLineParser cmdLineParser(&args, false);
-        
-        if (statsObject->isEnabled())
-            statsObject->logCmdLine(argc,argv);
-        
-        //end = time (NULL);
-        //dif = difftime(end, start);
-        //cout << "It took " << dif << " seconds\n";
-    }
-    if (argc<=1 || userParameters->getInteractive())
-    {
-        // FIXME: additional parameters like infile are ignored!
-        InteractiveMenu menu;
-        userParameters->setMenuFlag(true);
-        userParameters->setInteractive(true);
-        menu.mainMenu();
-    }
-    delete userParameters;
-    delete utilityObject;
-    delete subMatrix;
-    
-    if(logObject)
-    {
-        delete logObject;
-    }
-    return 0;
-}
-