+++ /dev/null
-/**
- * Author: Mark Larkin
- *
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
- */
-#ifndef ITERATION_H
-#define ITERATION_H
-#include "../alignment/Alignment.h"
-#include "../general/clustalw.h"
-
-namespace clustalw
-{
-
-class Iteration
-{
- public:
- //Iteration();
- bool iterationOnTreeNode(int numSeqsProf1, int numSeqsProf2, int& prfLength1,
- int& prfLength2, SeqArray* seqArray);
- bool removeFirstIterate(Alignment* alnPtr);
- private:
- void printSeqArray(SeqArray* arrayToPrint);
-};
-
-}
-
-#endif
-