Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / multipleAlign / Iteration.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/multipleAlign/Iteration.h b/website/archive/binaries/mac/src/clustalw/src/multipleAlign/Iteration.h
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+/**
+ * Author: Mark Larkin
+ * 
+ * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
+ */
+#ifndef ITERATION_H
+#define ITERATION_H
+#include "../alignment/Alignment.h"
+#include "../general/clustalw.h"
+
+namespace clustalw
+{
+
+class Iteration
+{
+    public:
+        //Iteration();
+        bool iterationOnTreeNode(int numSeqsProf1, int numSeqsProf2, int& prfLength1,
+                                    int& prfLength2, SeqArray* seqArray);
+        bool removeFirstIterate(Alignment* alnPtr);
+    private:
+        void printSeqArray(SeqArray* arrayToPrint);
+};
+
+}
+
+#endif
+