Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / multipleAlign / LowScoreSegProfile.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/multipleAlign/LowScoreSegProfile.h b/website/archive/binaries/mac/src/clustalw/src/multipleAlign/LowScoreSegProfile.h
deleted file mode 100644 (file)
index b442c6c..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/multipleAlign/LowScoreSegProfile.h
+++ /dev/null
@@ -1,43 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-/**
- * NOTE: This profile is not used in the multiple alignment part. It is used for the
- * the clustal Qt part. It is used in the calculation of low scoring segments.
- */
-#ifndef LOWSCORESEGPROFILE_H
-#define LOWSCORESEGPROFILE_H
-
-#include "../alignment/Alignment.h"
-
-namespace clustalw
-{
-
-class LowScoreSegProfile
-{
-    public:
-        /* Functions */
-        LowScoreSegProfile(int prfLen, int firstS, int lastS);
-        void calcLowScoreSegProfile(const SeqArray* seqArray, 
-                                int matrix[NUMRES][NUMRES], vector<int>* seqWeight);
-        const SeqArray* getProfilePtr(){return &profile;};                        
-        /* Attributes */
-
-    protected:
-        /* Functions */
-
-        /* Attributes */
-        SeqArray profile; 
-        int prfLength;
-        int firstSeq, lastSeq;
-    private:
-        /* Functions */
-
-        /* Attributes */
-
-};
-
-}
-#endif