Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / multipleAlign / ProfileAlignAlgorithm.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/multipleAlign/ProfileAlignAlgorithm.h b/website/archive/binaries/mac/src/clustalw/src/multipleAlign/ProfileAlignAlgorithm.h
deleted file mode 100644 (file)
index 1d2cf1d..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/multipleAlign/ProfileAlignAlgorithm.h
+++ /dev/null
@@ -1,40 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-#ifndef PROFILEALIGNALGORITHM_H
-#define PROFILEALIGNALGORITHM_H
-
-#include <vector>
-#include "../alignment/Alignment.h"
-namespace clustalw
-{
-
-class ProfileAlignAlgorithm
-{
-    public:
-  virtual ~ProfileAlignAlgorithm(){};
-
-    /* Functions */
-    virtual int profileAlign(Alignment* alnPtr, DistMatrix* distMat, vector<int>* group, 
-                             int* aligned) = 0;
-    /* Attributes */
-
-    protected:
-    /* Attributes */
-        int prfLength1;
-        int prfLength2;
-        SeqArray seqArray;
-        vector<int> alnWeight;
-        int nseqs1;
-        int nseqs2;     
-    private:
-    /* Functions */
-    
-    /* Attributes */
-       
-};
-
-}
-#endif