--- /dev/null
+/**
+ * Author: Mark Larkin
+ *
+ * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
+ */
+#ifndef PROFILESTANDARD_H
+#define PROFILESTANDARD_H
+
+#include "../alignment/Alignment.h"
+#include "ProfileBase.h"
+
+namespace clustalw
+{
+
+class ProfileStandard : public ProfileBase
+{
+ public:
+ /* Functions */
+ ProfileStandard(int prfLen, int firstS, int lastS);
+ void resetPrf2();
+ void calcStandardProfile(SeqArray* alignment, vector<int>* seqWeight);
+
+ /* Attributes */
+
+ private:
+ /* Functions */
+
+ /* Attributes */
+};
+
+}
+#endif