Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / multipleAlign / ProfileWithSub.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/multipleAlign/ProfileWithSub.h b/website/archive/binaries/mac/src/clustalw/src/multipleAlign/ProfileWithSub.h
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+/**
+ * Author: Mark Larkin
+ * 
+ * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
+ */
+#ifndef PROFILEWITHSUB_H
+#define PROFILEWITHSUB_H
+
+#include "../alignment/Alignment.h"
+#include "ProfileBase.h"
+
+namespace clustalw
+{
+
+class ProfileWithSub : public ProfileBase
+{
+    public:
+        /* Functions */
+        ProfileWithSub(int prfLen, int firstS, int lastS);
+        void resetPrf1();
+        void calcProfileWithSub(SeqArray* seqArray, vector<int>* gaps, 
+                                int matrix[NUMRES][NUMRES], vector<int>* seqWeight); 
+
+        /* Attributes */
+
+    private:
+        /* Functions */
+
+        /* Attributes */
+};
+
+}
+
+#endif