+++ /dev/null
-/**
- * Author: Mark Larkin
- *
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
- */
-#ifndef PAIRWISEALIGNBASE_H
-#define PAIRWISEALIGNBASE_H
-
-#include <vector>
-#include "../alignment/Alignment.h"
-
-namespace clustalw
-{
-
-class PairwiseAlignBase
-{
- public:
- virtual ~PairwiseAlignBase(){};
- /* Functions */
- virtual void pairwiseAlign(Alignment *alignPtr, DistMatrix *distMat, int iStart,
- int iEnd, int jStart, int jEnd) = 0;
- /* Attributes */
-
- private:
- /* Functions */
-
- /* Attributes */
-};
-
-}
-#endif