Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / pairwise / PairwiseAlignBase.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/pairwise/PairwiseAlignBase.h b/website/archive/binaries/mac/src/clustalw/src/pairwise/PairwiseAlignBase.h
new file mode 100644 (file)
index 0000000..67e1813
--- /dev/null
+++ b/website/archive/binaries/mac/src/clustalw/src/pairwise/PairwiseAlignBase.h
@@ -0,0 +1,31 @@
+/**
+ * Author: Mark Larkin
+ * 
+ * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
+ */
+#ifndef PAIRWISEALIGNBASE_H
+#define PAIRWISEALIGNBASE_H
+
+#include <vector>
+#include "../alignment/Alignment.h"
+
+namespace clustalw
+{
+
+class PairwiseAlignBase
+{
+    public:
+  virtual ~PairwiseAlignBase(){};
+        /* Functions */
+        virtual void pairwiseAlign(Alignment *alignPtr, DistMatrix *distMat, int iStart, 
+                                   int iEnd, int jStart, int jEnd) = 0; 
+        /* Attributes */
+
+    private:
+        /* Functions */
+
+        /* Attributes */
+};
+
+}
+#endif