Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / tree / AlignmentSteps.cpp

diff --git a/website/archive/binaries/mac/src/clustalw/src/tree/AlignmentSteps.cpp b/website/archive/binaries/mac/src/clustalw/src/tree/AlignmentSteps.cpp
deleted file mode 100644 (file)
index ed4f44b..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/tree/AlignmentSteps.cpp
+++ /dev/null
@@ -1,64 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-#ifdef HAVE_CONFIG_H
-    #include "config.h"
-#endif
-#include "AlignmentSteps.h"
-
-namespace clustalw
-{
-
-void AlignmentSteps::saveSet(int n, int *groups)
-{
-    vector<int> tempVec;
-    tempVec.resize(n + 1);
-    tempVec[0] = 0;
-    for(int i = 1; i < n + 1; i++)
-    {
-        tempVec[i] = groups[i - 1];
-    } 
-    steps.push_back(tempVec);
-    numSteps++;
-}
-
-void AlignmentSteps::saveSet(vector<int>* groups)
-{
-    steps.push_back(*groups);
-    numSteps++;
-}
-
-int AlignmentSteps::getNumSteps()
-{
-    return numSteps;
-}
-
-void AlignmentSteps::printAlignSteps()
-{
-    int rows = steps.size();
-    for(int i = 1; i < rows; i++)
-    {
-        for(int j = 1; j < (int)steps[i].size(); j++)
-        {
-            cout << " " << steps[i][j];
-        }
-        cout << "\n";
-    }
-    cout << "\n\n";
-}
-
-void AlignmentSteps::clear()
-{
-    int size = steps.size();
-    for(int i = 0; i < size; i++)
-    {
-        steps[i].clear();
-    }
-    steps.clear();
-    steps.push_back(vector<int>());
-    numSteps = 0;
-}
-
-}