Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / tree / AlignmentSteps.cpp

diff --git a/website/archive/binaries/mac/src/clustalw/src/tree/AlignmentSteps.cpp b/website/archive/binaries/mac/src/clustalw/src/tree/AlignmentSteps.cpp
new file mode 100644 (file)
index 0000000..ed4f44b
--- /dev/null
+++ b/website/archive/binaries/mac/src/clustalw/src/tree/AlignmentSteps.cpp
@@ -0,0 +1,64 @@
+/**
+ * Author: Mark Larkin
+ * 
+ * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
+ */
+#ifdef HAVE_CONFIG_H
+    #include "config.h"
+#endif
+#include "AlignmentSteps.h"
+
+namespace clustalw
+{
+
+void AlignmentSteps::saveSet(int n, int *groups)
+{
+    vector<int> tempVec;
+    tempVec.resize(n + 1);
+    tempVec[0] = 0;
+    for(int i = 1; i < n + 1; i++)
+    {
+        tempVec[i] = groups[i - 1];
+    } 
+    steps.push_back(tempVec);
+    numSteps++;
+}
+
+void AlignmentSteps::saveSet(vector<int>* groups)
+{
+    steps.push_back(*groups);
+    numSteps++;
+}
+
+int AlignmentSteps::getNumSteps()
+{
+    return numSteps;
+}
+
+void AlignmentSteps::printAlignSteps()
+{
+    int rows = steps.size();
+    for(int i = 1; i < rows; i++)
+    {
+        for(int j = 1; j < (int)steps[i].size(); j++)
+        {
+            cout << " " << steps[i][j];
+        }
+        cout << "\n";
+    }
+    cout << "\n\n";
+}
+
+void AlignmentSteps::clear()
+{
+    int size = steps.size();
+    for(int i = 0; i < size; i++)
+    {
+        steps[i].clear();
+    }
+    steps.clear();
+    steps.push_back(vector<int>());
+    numSteps = 0;
+}
+
+}