Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / tree / AlignmentSteps.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/tree/AlignmentSteps.h b/website/archive/binaries/mac/src/clustalw/src/tree/AlignmentSteps.h
deleted file mode 100644 (file)
index 4dbd1a4..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/tree/AlignmentSteps.h
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@@ -1,51 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-/**
- * The AlignmentSteps class is used to hold the progressive alignment steps that have
- * been calculated from the guide tree.
- *
- * Note: I have pushed an empty vector onto steps, so that the steps will match up
- * with the old sets array.
- *
- ***************************************************************************************/
- 
-#ifndef ALIGNMENTSTEPS_H
-#define ALIGNMENTSTEPS_H
-
-#include <vector>
-#include <string>
-#include <iostream>
-
-using namespace std;
-
-namespace clustalw
-{
-
-class AlignmentSteps
-{
-    public:
-        /* Functions */
-        AlignmentSteps() : numSteps(0){steps.push_back(vector<int>());}; // Empty vector 
-        void saveSet(int n, int *groups);
-        void saveSet(vector<int>* groups);
-        int getNumSteps();
-        string getNextStep();
-        void printAlignSteps();
-        const vector<vector<int> >* getSteps(){return &steps;};
-        vector<int>* getStep(int i){return &steps[i];};
-        void clear();
-        /* Attributes */
-
-    private:
-        /* Functions */
-        
-        /* Attributes */
-        vector<vector<int> > steps;
-        int numSteps;
-};
-
-}
-#endif