Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / tree / ClusterTreeOutput.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/tree/ClusterTreeOutput.h b/website/archive/binaries/mac/src/clustalw/src/tree/ClusterTreeOutput.h
deleted file mode 100644 (file)
index a1922be..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/tree/ClusterTreeOutput.h
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@@ -1,43 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-#ifndef CLUSTERTREEOUTPUT_H
-#define CLUSTERTREEOUTPUT_H
-
-#include <memory>
-#include <fstream>
-#include "../alignment/Alignment.h"
-#include "../general/clustalw.h"
-
-namespace clustalw
-{
-
-class ClusterTreeOutput
-{
-    public:
-        ClusterTreeOutput(clustalw::SeqInfo* seqInfo, int boot);
-        void printNexusTree(clustalw::PhyloTree* phyloTree, ofstream* tree,
-                   clustalw::Alignment *alignPtr, clustalw::DistMatrix* distMat, vector<int>* bootTotals);
-        void printTree(clustalw::PhyloTree* phyloTree, ofstream* tree, vector<int>* totals);
-        void printPhylipTree(clustalw::PhyloTree* phyloTree, ofstream* tree,
-                   clustalw::Alignment *alignPtr, clustalw::DistMatrix* distMat, vector<int>* bootTotals);
-        void printTreeDesc(clustalw::PhyloTree* phyloTree);
-          
-    private:
-        ClusterTreeOutput(); // Dont allow contruction with default!!!!
-        int twoWaySplit(clustalw::PhyloTree* phyloTree, ofstream* tree, int startRow, 
-                    int flag, clustalw::Alignment *alignPtr, vector<int>* bootTotals);
-        int twoWaySplitNexus(clustalw::PhyloTree* phyloTree, ofstream* tree, int startRow,
-                    int flag, clustalw::Alignment *alignPtr, vector<int>* bootTotals);
-        /* Attributes! */
-        int firstSeq;
-        int lastSeq;
-        int numSeqs;
-        int bootstrap;
-};
-
-}
-
-#endif