Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / tree / NJTree.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/tree/NJTree.h b/website/archive/binaries/mac/src/clustalw/src/tree/NJTree.h
deleted file mode 100644 (file)
index 8e8617d..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/tree/NJTree.h
+++ /dev/null
@@ -1,47 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-#ifndef NJTREE_H
-#define NJTREE_H
-
-#include <vector>
-#include <iomanip>
-#include "ClusterTreeAlgorithm.h"
-#include "../general/userparams.h"
-
-namespace clustalw
-{
-
-class NJTree : public ClusterTreeAlgorithm
-{
-    public:
-        NJTree(): verbose(false){};
-       virtual ~NJTree(){};
-
-        /** calculate an NJ tree
-         *
-         * @param phyTree the tree structure
-         * @param distMat distance matrix
-         * @param seqInfo holding sequence number info
-         * @param log ofstream to log info to (used by -outputtree)
-         *
-         */
-        virtual void generateTree(clustalw::PhyloTree* phyTree,
-                                  clustalw::DistMatrix* distMat,
-                                  clustalw::SeqInfo* seqInfo,
-                                  ofstream* log = 0);
-        /** be verbose during tree generation
-         *
-         *  if set to true, generateTree will need a log ofstream
-         */
-        virtual void setVerbose(bool choice){verbose = choice;};
-    private:
-        vector<double> av;
-        vector<int> tkill;
-        bool verbose;
-};
-
-}
-#endif