+++ /dev/null
-/**
- * Author: Mark Larkin
- *
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.
- */
-#ifndef ROOTEDCLUSTERTREE_H
-#define ROOTEDCLUSTERTREE_H
-#include "../ClusterTree.h"
-#include "RootedGuideTree.h"
-#include "../AlignmentSteps.h"
-namespace clustalw
-{
-
-class RootedClusterTree : private ClusterTree
-{
- public:
- //RootedClusterTree();
- /**
- * NOTE these will have different signatures!!!!
- */
- void treeFromAlignment(TreeNames* treeNames, Alignment *alignPtr);
- auto_ptr<AlignmentSteps> treeFromDistMatrix(RootedGuideTree* phyloTree,
- DistMatrix* distMat, Alignment *alignPtr, int seq1,
- int nSeqs, string& phylipName);
-};
-
-}
-#endif