Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / tree / UPGMA / RootedGuideTree.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/tree/UPGMA/RootedGuideTree.h b/website/archive/binaries/mac/src/clustalw/src/tree/UPGMA/RootedGuideTree.h
deleted file mode 100644 (file)
index 197167c..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/tree/UPGMA/RootedGuideTree.h
+++ /dev/null
@@ -1,43 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-/**
- * Changes:
- * mark May 8th 2007: removed makeEmpty(Node* t function), changed makeEmpty(). I also
- * made changes to any functions that accessed Node's data members 
- */
-#ifndef ROOTEDGUIDETREE_H
-#define ROOTEDGUIDETREE_H
-
-#include "Node.h"
-#include <fstream>
-
-#include "../../alignment/Alignment.h"
-
-namespace clustalw
-{
-
-using namespace std;
-
-class RootedGuideTree
-{
-    public:
-        RootedGuideTree();
-        RootedGuideTree(Node* root);
-        ~RootedGuideTree();
-        void setRoot(Node* r);
-        void makeEmpty();
-        void calcSeqWeights(int firstSeq, int lastSeq, vector<int>* seqWeights);
-        Node* getRoot(){return root;}
-    private:
-        void orderNodes();
-        int calcOrderNode(Node* node);
-        void calcWeights(vector<int>* seqWeights);
-        void doWeightCalc(float weightSoFar, vector<float>* seqWeights, Node* t);
-        Node* root;
-};
-
-}
-#endif