Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / tree / UPGMA / RootedTreeOutput.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/tree/UPGMA/RootedTreeOutput.h b/website/archive/binaries/mac/src/clustalw/src/tree/UPGMA/RootedTreeOutput.h
deleted file mode 100644 (file)
index 7b9805c..0000000
--- a/website/archive/binaries/mac/src/clustalw/src/tree/UPGMA/RootedTreeOutput.h
+++ /dev/null
@@ -1,46 +0,0 @@
-/**
- * Author: Mark Larkin
- * 
- * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
- */
-/**
- * Changes:
- * mark 8-5-2007: I removed the isLeafNode function. Changed both the traversal functions
- * to access Node's data members via functions.
- */
-#ifndef ROOTEDTREEOUTPUT_H
-#define ROOTEDTREEOUTPUT_H
-
-#include <fstream>
-#include "RootedGuideTree.h"
-#include "../../general/clustalw.h"
-
-
-/** this is only used for upgma?!
- *
- */
-
-
-namespace clustalw
-{
-
-class RootedTreeOutput
-{
-    public:
-        RootedTreeOutput(SeqInfo* seqInfo);
-        void printPhylipTree(RootedGuideTree* tree, ofstream* ptrToFile, Alignment *alignPtr,
-                             DistMatrix* distMat);
-        void printNexusTree(RootedGuideTree* tree, ofstream* ptrToFile, Alignment *alignPtr, 
-                            DistMatrix* distMat);                   
-                
-    private:
-        void phylipTraverse(ofstream* ptrToFile, Alignment *alignPtr, Node* tree);
-        void nexusTraverse(ofstream* ptrToFile, Alignment *alignPtr, Node* tree);
-        int firstSeq;
-        int lastSeq;
-        int numSeqs;                  
-};
-
-}
-
-#endif