Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / clustalw / src / tree / UnRootedClusterTree.h

diff --git a/website/archive/binaries/mac/src/clustalw/src/tree/UnRootedClusterTree.h b/website/archive/binaries/mac/src/clustalw/src/tree/UnRootedClusterTree.h
new file mode 100644 (file)
index 0000000..4cd4a25
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+++ b/website/archive/binaries/mac/src/clustalw/src/tree/UnRootedClusterTree.h
@@ -0,0 +1,27 @@
+/**
+ * Author: Mark Larkin
+ * 
+ * Copyright (c) 2007 Des Higgins, Julie Thompson and Toby Gibson.  
+ */
+#ifndef UNROOTEDCLUSTERTREE_H
+#define UNROOTEDCLUSTERTREE_H
+#include "ClusterTree.h"
+
+namespace clustalw
+{
+
+class UnRootedClusterTree : private ClusterTree
+{
+    public:    
+        UnRootedClusterTree();
+        void treeFromAlignment(TreeNames* treeNames, Alignment *alignPtr);
+        void treeFromDistMatrix(DistMatrix* distMat, Alignment *alignPtr, int seq1, 
+                                int nSeqs, string& phylipName);
+        void bootstrapTree(TreeNames* treeNames, Alignment *alignPtr);
+    private:
+        PhyloTree* phyloTree;
+        ClusterTreeOutput* outputTree;    
+};
+
+}
+#endif