Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / compilebin.sh

diff --git a/website/archive/binaries/mac/src/compilebin.sh b/website/archive/binaries/mac/src/compilebin.sh
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+#!/bin/bash
+
+echo ""
+echo "Compiling Clustalw..."
+cd clustalw
+chmod +x ./configure 
+./configure
+make clean 
+make
+chmod +x src/clustalw2 
+cd ..
+
+echo "Compiling Clustal Omega..."
+cd clustalo
+make clean
+chmod +x ./configure 
+./configure
+make
+cd ..
+
+echo "Compiling Mafft..."
+cd mafft/core
+make clean
+make
+cd ../..
+
+echo "Compiling Mafft dependency fasta34..."
+cd fasta34
+rm *.o
+make 
+chmod +x fasta34
+cd ..
+
+
+echo "Compiling Muscle..."
+cd muscle
+rm -f *.o muscle
+make
+cd ..
+
+echo "Compiling Probcons..."
+cd probcons
+make clean 
+make
+chmod +x probcons
+cd ..
+
+echo "Compiling T-Coffee..."
+cd tcoffee
+chmod +x install
+./install clean
+./install t_coffee -force
+chmod +x t_coffee_source/t_coffee
+cd ..
+
+echo "Compiling DisEMBL..."
+cd disembl
+gcc -O3 disembl.c -o disembl
+echo "DONE"
+chmod +x disembl DisEMBL.py
+
+echo "Compiling DisEMBL dependancy Tisean... "
+cd Tisean_3.0.1
+chmod +x ./configure
+./configure
+make
+cp source_c/sav_gol ../
+cd ..
+echo "DONE"
+chmod +x sav_gol
+cd ..
+
+echo "Setting up GlobPlot ..."
+cp disembl/sav_gol globplot/sav_gol
+cd globplot
+chmod +x GlobPlot.py
+echo "DONE"
+cd ..
+
+echo "Compiling IUPred..."
+cd iupred
+make clean
+make 
+echo "DONE"
+cd ..
+