Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / disembl / Tisean_3.0.1 / source_c / corr.c

diff --git a/website/archive/binaries/mac/src/disembl/Tisean_3.0.1/source_c/corr.c b/website/archive/binaries/mac/src/disembl/Tisean_3.0.1/source_c/corr.c
new file mode 100644 (file)
index 0000000..06da07a
--- /dev/null
+++ b/website/archive/binaries/mac/src/disembl/Tisean_3.0.1/source_c/corr.c
@@ -0,0 +1,179 @@
+/*
+ *   This file is part of TISEAN
+ *
+ *   Copyright (c) 1998-2007 Rainer Hegger, Holger Kantz, Thomas Schreiber
+ *
+ *   TISEAN is free software; you can redistribute it and/or modify
+ *   it under the terms of the GNU General Public License as published by
+ *   the Free Software Foundation; either version 2 of the License, or
+ *   (at your option) any later version.
+ *
+ *   TISEAN is distributed in the hope that it will be useful,
+ *   but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ *   GNU General Public License for more details.
+ *
+ *   You should have received a copy of the GNU General Public License
+ *   along with TISEAN; if not, write to the Free Software
+ *   Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
+ */
+/*Author: Rainer Hegger. Last modified: Sep 3, 1999 */
+#include <stdio.h>
+#include <stdlib.h>
+#include <math.h>
+#include <limits.h>
+#include <string.h>
+#include "routines/tsa.h"
+
+#define WID_STR "Estimates the autocorrelations of a data set"
+
+char *format,*outfile=NULL,stout=1,normalize=1;
+unsigned int column=1;
+unsigned int verbosity=0xff;
+unsigned long tau=100,length=ULONG_MAX,exclude=0;
+double *array;
+double av,var;
+char *infile=NULL;
+
+void show_options(char *progname) 
+{
+  what_i_do(progname,WID_STR);
+  fprintf(stderr," Usage: %s [Options]\n",progname);
+  fprintf(stderr," Options:\n");
+  fprintf(stderr,"Everything not being a valid option will be interpreted"
+          " as a possible"
+          " datafile.\nIf no datafile is given stdin is read. Just - also"
+          " means stdin\n");
+  fprintf(stderr,"\t-l length [default is whole file]\n");
+  fprintf(stderr,"\t-x # of lines to be ignored [default 0]\n");
+  fprintf(stderr,"\t-c column to read [default is 1]\n");
+  fprintf(stderr,"\t-D corrlength  [default is 100]\n");
+  fprintf(stderr,"\t-n don\'t normalize to the variance"
+         " of the data [not set]\n");
+  fprintf(stderr,"\t-o output_file  [default is 'datafile'.cor; no -o"
+  " means stdout]\n");
+  fprintf(stderr,"\t-V verbosity level [default is 1]\n\t\t"
+          "0='only panic messages'\n\t\t"
+          "1='+ input/output messages'\n");
+  fprintf(stderr,"\t-h show these options\n");
+  fprintf(stderr,"\n");
+  exit(0);
+}
+
+void scan_options(int argc,char **argv)
+{
+  char *out;
+
+  if ((out=check_option(argv,argc,'l','u')) != NULL)
+    sscanf(out,"%lu",&length);
+  if ((out=check_option(argv,argc,'x','u')) != NULL)
+    sscanf(out,"%lu",&exclude);
+  if ((out=check_option(argv,argc,'c','u')) != NULL)
+    sscanf(out,"%u",&column);
+  if ((out=check_option(argv,argc,'D','u')) != NULL)
+    sscanf(out,"%lu",&tau);
+  if ((out=check_option(argv,argc,'n','n')) != NULL)
+    normalize=0;
+  if ((out=check_option(argv,argc,'V','u')) != NULL)
+    sscanf(out,"%u",&verbosity);
+  if ((out=check_option(argv,argc,'o','o')) != NULL) {
+    stout=0;
+    if (strlen(out) > 0)
+      outfile=out;
+  }
+}
+
+double corr(long i)
+{
+  long j;
+  double c=0.0;
+  
+  for (j=0;j<(length-i);j++)
+    c += array[j]*array[j+i];
+
+  return c/(length-i);
+}
+
+int main(int argc,char** argv)
+{
+  char stdi=0;
+  long i;
+  FILE *fout=NULL;
+  
+  if (scan_help(argc,argv))
+    show_options(argv[0]);
+  
+  scan_options(argc,argv);
+#ifndef OMIT_WHAT_I_DO
+  if (verbosity&VER_INPUT)
+    what_i_do(argv[0],WID_STR);
+#endif
+
+  infile=search_datafile(argc,argv,&column,verbosity);
+  if (infile == NULL)
+    stdi=1;
+  
+  if (outfile == NULL) {
+    if (!stdi) {
+      check_alloc(outfile=(char*)calloc(strlen(infile)+5,(size_t)1));
+      strcpy(outfile,infile);
+      strcat(outfile,".cor");
+    }
+    else {
+      check_alloc(outfile=(char*)calloc((size_t)10,(size_t)1));
+      strcpy(outfile,"stdin.cor");
+    }
+  }
+  if (!stout)
+    test_outfile(outfile);
+
+  array=(double*)get_series(infile,&length,exclude,column,verbosity);
+
+  if (tau >= length)
+    tau=length-1;
+
+  variance(array,length,&av,&var);
+
+  if (normalize) {
+    for (i=0;i<length;i++)
+      array[i] -= av;
+  }
+
+  if (!stout) {
+    fout=fopen(outfile,"w");
+    if (verbosity&VER_INPUT)
+      fprintf(stderr,"Opened %s for writing\n",outfile);
+    fprintf(fout,"# average=%e\n",av);
+    fprintf(fout,"# standard deviation=%e\n",var);
+  }
+  else {
+    if (verbosity&VER_INPUT)
+      fprintf(stderr,"Writing to stdout\n");
+    fprintf(stdout,"# average=%e\n",av);
+    fprintf(stdout,"# standard deviation=%e\n",var);
+  }
+  if (normalize)
+    var *= var;
+  else
+    var=1.0;
+
+  for (i=0;i<=tau;i++)
+    if (!stout) {
+      fprintf(fout,"%ld %e\n",i,corr(i)/var);
+      fflush(fout);
+    }
+    else {
+      fprintf(stdout,"%ld %e\n",i,corr(i)/var);
+      fflush(stdout);
+    }
+  if (!stout)
+    fclose(fout);
+
+  if (outfile != NULL)
+    free(outfile);
+  if (infile != NULL)
+    free(infile);
+  free(array);
+
+  return 0;
+}