+++ /dev/null
-/*
- * This file is part of TISEAN
- *
- * Copyright (c) 1998-2007 Rainer Hegger, Holger Kantz, Thomas Schreiber
- *
- * TISEAN is free software; you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or
- * (at your option) any later version.
- *
- * TISEAN is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with TISEAN; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
- */
-/*Author: Rainer Hegger. Last modified (rewritten in C) Aug 22, 2004*/
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-#include <limits.h>
-#include <ctype.h>
-#include "routines/tsa.h"
-
-#define WID_STR "Produces delay vectors"
-
-
-unsigned long length=ULONG_MAX;
-unsigned long exclude=0;
-unsigned int verbosity=0xff;
-int delay=1;
-unsigned int indim=1,embdim=2;
-char *column=NULL,*format=NULL,*multidelay=NULL;
-char *outfile=NULL;
-char *infile=NULL;
-char dimset=0,formatset=0,embset=0,mdelayset=0,delayset=0;
-char stdo=1;
-
-double **series;
-unsigned int *formatlist,*delaylist;
-
-void show_options(char *progname)
-{
- what_i_do(progname,WID_STR);
- fprintf(stderr,"\nUsage: %s [options]\n",progname);
- fprintf(stderr,"Options:\n");
- fprintf(stderr,"Everything not being a valid option will be interpreted as a"
- " possible datafile.\nIf no datafile is given stdin is read."
- " Just - also means stdin\n");
- fprintf(stderr,"\t-l # of data [default: whole file]\n");
- fprintf(stderr,"\t-x # of rows to ignore [default: 0]\n");
- fprintf(stderr,"\t-M num. of columns to read [default: %u]\n",indim);
- fprintf(stderr,"\t-c columns to read [default: 1,...,M]\n");
- fprintf(stderr,"\t-m dimension [default: 2]\n");
- fprintf(stderr,"\t-F format of the delay vector (see man page)\n");
- fprintf(stderr,"\t-d delay [default: 1]\n");
- fprintf(stderr,"\t-D multi delay list (see man page)\n");
- fprintf(stderr,"\t-V verbosity level [default: 1]\n\t\t"
- "0='only panic messages'\n\t\t"
- "1='+ input/output messages'\n");
- fprintf(stderr,"\t-o output file [default: 'datafile'.del, "
- "without -o: stdout]\n");
- fprintf(stderr,"\t-h show these options\n");
- exit(0);
-}
-
-void scan_options(int n,char **str)
-{
- char *out;
-
- if ((out=check_option(str,n,'l','u')) != NULL)
- sscanf(out,"%lu",&length);
- if ((out=check_option(str,n,'x','u')) != NULL)
- sscanf(out,"%lu",&exclude);
- if ((out=check_option(str,n,'c','s')) != NULL)
- column=out;
- if ((out=check_option(str,n,'M','u')) != NULL) {
- sscanf(out,"%u",&indim);
- dimset=1;
- }
- if ((out=check_option(str,n,'F','s')) != NULL) {
- format=out;
- formatset=1;
- }
- if ((out=check_option(str,n,'m','u')) != NULL) {
- sscanf(out,"%u",&embdim);
- embset=1;
- }
- if ((out=check_option(str,n,'d','u')) != NULL) {
- sscanf(out,"%u",&delay);
- delayset=1;
- }
- if ((out=check_option(str,n,'D','s')) != NULL) {
- multidelay=out;
- mdelayset=1;
- }
- if ((out=check_option(str,n,'V','u')) != NULL)
- sscanf(out,"%u",&verbosity);
- if ((out=check_option(str,n,'o','o')) != NULL) {
- stdo=0;
- if (strlen(out) > 0)
- outfile=out;
- }
-}
-
-void create_format_list(void)
-{
- unsigned int i=0,num=0,sum=0;
-
- while (format[i]) {
- if (!(isdigit(format[i])) && !(format[i] == ',')) {
- fprintf(stderr,"Wrong format of -F parameter. Exiting!\n");
- exit(DELAY_WRONG_FORMAT_F);
- }
- i++;
- }
-
- i=0;
- while (format[i]) {
- if (format[i++] == ',')
- num++;
- }
-
- check_alloc(formatlist=(unsigned int*)malloc(sizeof(int)*(num+1)));
- for (i=0;i<=num;i++) {
- sscanf(format,"%d",&formatlist[i]);
- if (i<num) {
- while ((*format) != ',')
- format++;
- }
- format++;
- }
-
- if (dimset && ((num+1) != indim)) {
- fprintf(stderr,"Number of dimensions in -F is not equal to -M. Exiting!\n");
- exit(DELAY_DIM_NOT_EQUAL_F_M);
- }
-
- for (i=0;i<=num;i++)
- sum += formatlist[i];
- if (embset && (sum != embdim)) {
- fprintf(stderr,"The dimensions given in -m and -F are not equal!"
- " Exiting\n");
- exit(DELAY_DIM_NOT_EQUAL_F_m);
- }
- if (!dimset)
- indim=num+1;
- if (!embset)
- embdim=sum;
-}
-
-void create_delay_list(void)
-{
- unsigned int i=0,num=0;
-
- while (multidelay[i]) {
- if (!(isdigit(multidelay[i])) && !(multidelay[i] == ',')) {
- fprintf(stderr,"Wrong format of -D parameter. Exiting!\n");
- exit(DELAY_WRONG_FORMAT_D);
- }
- i++;
- }
-
- i=0;
- while (multidelay[i]) {
- if (multidelay[i++] == ',')
- num++;
- }
-
- check_alloc(delaylist=(unsigned int*)malloc(sizeof(int)*(num+1)));
- for (i=0;i<=num;i++) {
- sscanf(multidelay,"%d",&delaylist[i]);
- if (i<num) {
- while ((*multidelay) != ',')
- multidelay++;
- }
- multidelay++;
- }
-
- if ((num+1) != (embdim-indim)) {
- fprintf(stderr,"Wrong number of delays. See man page. Exiting!\n");
- exit(DELAY_WRONG_NUM_D);
- }
-}
-
-int main(int argc,char **argv)
-{
- char stin=0;
- unsigned long i;
- int j,k;
- unsigned int alldim,maxemb,emb,rundel,delsum,runmdel;
- unsigned int *inddelay;
- FILE *fout;
-
- if (scan_help(argc,argv))
- show_options(argv[0]);
-
- scan_options(argc,argv);
-#ifndef OMIT_WHAT_I_DO
- if (verbosity&VER_INPUT)
- what_i_do(argv[0],WID_STR);
-#endif
-
-
- infile=search_datafile(argc,argv,NULL,verbosity);
- if (infile == NULL)
- stin=1;
-
- if (outfile == NULL) {
- if (!stin) {
- check_alloc(outfile=(char*)calloc(strlen(infile)+5,1));
- strcpy(outfile,infile);
- strcat(outfile,".del");
- }
- else {
- check_alloc(outfile=(char*)calloc(10,1));
- strcpy(outfile,"stdin.del");
- }
- }
- if (!stdo)
- test_outfile(outfile);
-
- if (delayset && mdelayset) {
- fprintf(stderr,"-d and -D can't be used simultaneously. Exiting!\n");
- exit(DELAY_INCONS_d_D);
- }
-
- if (delay < 1) {
- fprintf(stderr,"Delay has to be larger than 0. Exiting!\n");
- exit(DELAY_SMALL_ZERO);
- }
-
- if (!formatset && (embdim%indim)) {
- fprintf(stderr,"Inconsistent -m and -M. Please set -F\n");
- exit(DELAY_INCONS_m_M);
- }
- if (formatset) {
- create_format_list();
- }
- else {
- check_alloc(formatlist=(unsigned int*)malloc(sizeof(int)*indim));
- for (i=0;i<indim;i++) {
- formatlist[i]=embdim/indim;
- }
- }
-
- alldim=0;
- for (i=0;i<indim;i++)
- alldim += formatlist[i];
-
- if (mdelayset) {
- create_delay_list();
- }
-
- check_alloc(inddelay=(unsigned int*)malloc(sizeof(int)*alldim));
-
- rundel=0;
- if (!mdelayset) {
- for (i=0;i<indim;i++) {
- delsum=0;
- inddelay[rundel++]=delsum;
- for (j=1;j<formatlist[i];j++) {
- delsum += delay;
- inddelay[rundel++]=delsum;
- }
- }
- }
- else {
- runmdel=0;
- for (i=0;i<indim;i++) {
- delsum=0;
- inddelay[rundel++]=delsum;
- for (j=1;j<formatlist[i];j++) {
- delsum += delaylist[runmdel++];
- inddelay[rundel++]=delsum;
- }
- }
- }
-
- maxemb=0;
- for (i=0;i<alldim;i++)
- maxemb=(maxemb<inddelay[i])?inddelay[i]:maxemb;
-
- if (column == NULL) {
- series=get_multi_series(infile,&length,exclude,&indim,"",dimset,verbosity);
- }
- else {
- series=get_multi_series(infile,&length,exclude,&indim,column,dimset,
- verbosity);
- }
-
- if (stdo) {
- if (verbosity)
- fprintf(stderr,"Writing to stdout\n");
- for (i=maxemb;i<length;i++) {
- rundel=0;
- for (j=0;j<indim;j++) {
- emb=formatlist[j];
- for (k=0;k<emb;k++)
- fprintf(stdout,"%e ",series[j][i-inddelay[rundel++]]);
- }
- fprintf(stdout,"\n");
- }
- }
- else {
- fout=fopen(outfile,"w");
- if (verbosity)
- fprintf(stderr,"Opened %s for writing\n",outfile);
- for (i=maxemb;i<length;i++) {
- for (j=0;j<indim;j++) {
- rundel=0;
- emb=formatlist[j];
- for (k=0;k<emb;k++)
- fprintf(fout,"%e ",series[j][i-inddelay[rundel++]]);
- }
- fprintf(fout,"\n");
- }
- fclose(fout);
- }
-
- if (formatlist != NULL)
- free(formatlist);
- if (delaylist != NULL)
- free(delaylist);
- free(inddelay);
-
- return 0;
-}
git://source.jalview.org / jabaws.git / blobdiff