+++ /dev/null
-/*
- * This file is part of TISEAN
- *
- * Copyright (c) 1998-2007 Rainer Hegger, Holger Kantz, Thomas Schreiber
- *
- * TISEAN is free software; you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation; either version 2 of the License, or
- * (at your option) any later version.
- *
- * TISEAN is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with TISEAN; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
- */
-/*Author: Rainer Hegger Last modified: Sep 3, 1999 */
-/*Note: Keep in mind that the first index runs the dimension,
- the second the time series index */
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-#include <ctype.h>
-#include "tsa.h"
-#include "tisean_cec.h"
-
-#define SIZE_STEP 1000
-extern void check_alloc(void*);
-
-double **get_multi_series(char *name,unsigned long *l,unsigned long ex,
- unsigned int *col,char *which,char colfix,
- unsigned int verbosity)
-{
- char *input,**format;
- int i,j;
- unsigned int *hcol,maxcol=0,colcount=0;
- unsigned long count,max_size=SIZE_STEP,hl,allcount;
- int input_size=INPUT_SIZE;
- double **x;
- FILE *fin;
-
- if (strlen(which) > 0) {
- colcount=1;
- for (i=0;i<strlen(which)-1;i++) {
- if (!isdigit((unsigned int)which[i]) && (which[i] != ',')) {
- fprintf(stderr,"Wrong format in the column string."
- " Has to be num,num,num,...,num\n");
- exit(GET_MULTI_SERIES_WRONG_TYPE_OF_C);
- }
- if (which[i] == ',') {
- colcount++;
- which[i]=' ';
- }
- }
- if (!isdigit((unsigned int)which[strlen(which)-1])) {
- fprintf(stderr,"Wrong format in the column string."
- " Has to be num,num,num,...,num\n");
- exit(GET_MULTI_SERIES_WRONG_TYPE_OF_C);
- }
- }
- if (!colfix && (*col < colcount))
- *col=colcount;
-
- check_alloc(input=(char*)calloc((size_t)input_size,(size_t)1));
- check_alloc(hcol=(unsigned int*)malloc(sizeof(unsigned int)* *col));
- while ((int)(*which) && isspace((unsigned int)(*which)))
- which++;
- if (*which)
- for (i=0;i< *col-1;i++) {
- sscanf(which,"%u",&hcol[i]);
- if (hcol[i] > maxcol)
- maxcol=hcol[i];
- while ((int)(*which) && !isspace((unsigned int)(*which)))
- which++;
- while ((int)(*which) && isspace((unsigned int)(*which)))
- which++;
- if (!((int)(*which)))
- break;
- }
- else
- i= -1;
-
- if (*which)
- sscanf(which,"%u",&hcol[i]);
- else
- for (j=i+1;j< *col;j++)
- hcol[j]= ++maxcol;
-
- if (verbosity&VER_INPUT) {
- fprintf(stderr,"Using columns: ");
- for (i=0;i< *col;i++)
- fprintf(stderr,"%d ",hcol[i]);
- fprintf(stderr,"\n");
- }
-
- check_alloc(format=(char**)malloc(sizeof(char*)* *col));
- for (i=0;i< *col;i++) {
- check_alloc(format[i]=(char*)calloc((size_t)(4*hcol[i]),(size_t)1));
- strcpy(format[i],"");
- for (j=1;j<hcol[i];j++)
- strcat(format[i],"%*lf");
- strcat(format[i],"%lf");
- }
- free(hcol);
-
- check_alloc(x=(double**)malloc(sizeof(double*)* *col));
- for (i=0;i< *col;i++)
- check_alloc(x[i]=(double*)malloc(sizeof(double)*max_size));
- hl= *l;
-
- count=0;
- allcount=0;
- if (name == NULL) {
- for (i=0;i<ex;i++)
- if ((input=myfgets(input,&input_size,stdin,verbosity)) == NULL)
- break;
- while ((count < hl) &&
- ((input=myfgets(input,&input_size,stdin,verbosity)) != NULL)) {
- if (count == max_size) {
- max_size += SIZE_STEP;
- for (i=0;i< *col;i++)
- check_alloc(x[i]=(double*)realloc(x[i],sizeof(double)*max_size));
- }
- allcount++;
- for (i=0;i< *col;i++)
- if (sscanf(input,format[i],&x[i][count]) != 1) {
- if (verbosity&VER_INPUT)
- fprintf(stderr,"Line %lu ignored: %s",allcount,input);
- break;
- }
- if (i == *col)
- count++;
- }
- }
- else {
- fin=fopen(name,"r");
- for (i=0;i<ex;i++)
- if ((input=myfgets(input,&input_size,fin,verbosity)) == NULL)
- break;
- while ((count < hl) &&
- ((input=myfgets(input,&input_size,fin,verbosity)) != NULL)) {
- if (count == max_size) {
- max_size += SIZE_STEP;
- for (i=0;i< *col;i++)
- check_alloc(x[i]=(double*)realloc(x[i],sizeof(double)*max_size));
- }
- allcount++;
- for (i=0;i< *col;i++)
- if (sscanf(input,format[i],&x[i][count]) != 1) {
- if (verbosity&VER_INPUT)
- fprintf(stderr,"Line %lu ignored: %s",allcount,input);
- break;
- }
- if ((count == 0) && (i == *col) && (verbosity&VER_FIRST_LINE)) {
- fprintf(stderr,"get_multi_series: first data item(s) used:\n");
- for (i=0;i< *col;i++)
- fprintf(stderr,"%lf ",x[i][0]);
- fprintf(stderr,"\n");
- }
- if (i == *col)
- count++;
- }
- fclose(fin);
- }
-
- for (i=0;i< *col;i++)
- free(format[i]);
- free(format);
- free(input);
-
- *l = count;
- if (*l == 0) {
- fprintf(stderr,"0 lines read. It makes no sense to continue. Exiting!\n");
- exit(GET_MULTI_SERIES_NO_LINES);
- }
- else {
- if (verbosity&VER_INPUT)
- fprintf(stderr,"Use %lu lines.\n",*l);
- }
-
- if (max_size > count)
- for (i=0;i< *col;i++)
- check_alloc(x[i]=(double*)realloc(x[i],sizeof(double)*count));
-
- return x;
-}
-#undef SIZE_STEP
git://source.jalview.org / jabaws.git / blobdiff