--- /dev/null
+c===========================================================================
+c
+c This file is part of TISEAN
+c
+c Copyright (c) 1998-2007 Rainer Hegger, Holger Kantz, Thomas Schreiber
+c
+c TISEAN is free software; you can redistribute it and/or modify
+c it under the terms of the GNU General Public License as published by
+c the Free Software Foundation; either version 2 of the License, or
+c (at your option) any later version.
+c
+c TISEAN is distributed in the hope that it will be useful,
+c but WITHOUT ANY WARRANTY; without even the implied warranty of
+c MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+c GNU General Public License for more details.
+c
+c You should have received a copy of the GNU General Public License
+c along with TISEAN; if not, write to the Free Software
+c Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+c
+c===========================================================================
+c endtoend.f
+c Determine end-to-end mismatch before making surrogate data
+c author T. Schreiber (1999)
+c===========================================================================
+
+ parameter(nx=100000,mx=20)
+ dimension x(nx,mx), icol(mx)
+ character*72 file, fout
+ data iverb/15/
+
+ call whatido("Determine end-to-end mismatch",iverb)
+ nmax=ican("l",nx)
+ nexcl=ican("x",0)
+ wjump=fcan("j",0.5)
+ mcmax=ican("m",0)
+ call columns(mc,mx,icol)
+ if(mcmax.eq.0) mcmax=max(1,mc)
+ isout=igetout(fout,iverb)
+
+ call nthstring(1,file)
+ call xreadfile(nmax,mcmax,nx,x,nexcl,icol,file,iverb)
+ if(file.eq."-") file="stdin"
+ if(isout.eq.1) call addsuff(fout,file,"_end")
+ call outfile(fout,iunit,iverb)
+ nmaxp=nmax
+ etotm=mcmax
+ 1 nmaxp=nless(nmaxp)
+ call jump(nmax,nmaxp,nx,x,mcmax,wjump,etot,ejump,eslip,njump)
+ if(etot.lt.etotm) then
+ etotm=etot
+ write(iunit,'(a,i7,a,i7,a,f5.1,a)')
+ . "length:", nmaxp,
+ . " offset: ", nexcl+njump,
+ . " lost: ", real(nmax-nmaxp)/real(nmax)*100, " %"
+ write(iunit,*) " jump: ", ejump*100, " %"
+ write(iunit,*) " slip: ", eslip*100, " %"
+ write(iunit,*) " weighted: ", etot*100, " %"
+ write(iunit,'()')
+ endif
+ if(etot.lt.1e-5) stop
+ nmaxp=nmaxp-1
+ if(nmaxp.gt.2) goto 1
+ end
+
+ subroutine usage()
+c usage message
+
+ call whatineed(
+ . "[-j# -o outfile -l# -x# -c# -V# -h] file")
+ call popt("j","weight given to jump relative to slip (0.5)")
+ call popt("l","number of values to be read (all)")
+ call popt("x","number of values to be skipped (0)")
+ call popt("m","number of columns to be read (1)")
+ call popt("c","columns to be read (1)")
+ call pout("file_end")
+ call pall()
+ stop
+ end
+
+ subroutine jump(nmax,nmaxp,nx,x,mcmax,wjump,etot,ejump,eslip,
+ . njump)
+c loop through time ofsets to minimize jump effect
+ dimension x(nx,*)
+
+ etot=mcmax
+ do 10 nj=0,nmax-nmaxp
+ xj=0
+ sj=0
+ do 20 m=1,mcmax
+ xj=xj+xjump(nmaxp,x(1+nj,m))
+ 20 sj=sj+sjump(nmaxp,x(1+nj,m))
+ if(wjump*xj+(1-wjump)*sj.ge.etot) goto 10
+ etot=wjump*xj+(1-wjump)*sj
+ ejump=xj
+ eslip=sj
+ njump=nj
+ 10 continue
+ end
+
+ function xjump(nmax,x)
+c contribution of end effect to 1st derivative
+ dimension x(*)
+
+ call rms(nmax,x,sc,sd)
+ xjump=0
+ if(sd.eq.0.) return
+ xjump=(x(1)-x(nmax))**2/(nmax*sd**2)
+ end
+
+ function sjump(nmax,x)
+c contribution of end effect to 2nd derivative
+ dimension x(*)
+
+ call rms(nmax,x,sc,sd)
+ sjump=0
+ if(sd.eq.0.) return
+ sjump=((x(nmax)-x(nmax-1))-(x(2)-x(1)))**2 / (nmax*sd**2)
+ end
+