Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / disembl / biopython-1.50 / Bio / clistfnsmodule.c

diff --git a/website/archive/binaries/mac/src/disembl/biopython-1.50/Bio/clistfnsmodule.c b/website/archive/binaries/mac/src/disembl/biopython-1.50/Bio/clistfnsmodule.c
deleted file mode 100644 (file)
index 8d86b44..0000000
--- a/website/archive/binaries/mac/src/disembl/biopython-1.50/Bio/clistfnsmodule.c
+++ /dev/null
@@ -1,161 +0,0 @@
-/* Copyright 2000 by Jeffrey Chang.  All rights reserved.
- * This code is part of the Biopython distribution and governed by its
- * license.  Please see the LICENSE file that should have been included
- * as part of this package.
- *
- * clistfnsmodule.c
- * Created 3 Jun 2000
- */
-
-#include "Python.h"
-#include <math.h>
-
-
-
-
-/************************************** Exported Functions ***********/
-
-static char clistfns_count__doc__[] = 
-"count(items) -> dict of counts of each item\n\
-\n\
-Count the number of times each item appears in a list of data.\n\
-\n\
-";
-
-static PyObject *clistfns_count(PyObject *self, PyObject *args)
-{
-    int i;
-    PyObject *items, *counts;
-    PyObject *item, *count, *newcount;
-    long int current;
-
-    if(!PyArg_ParseTuple(args, "O", &items))
-       return NULL;
-    if(!PySequence_Check(items)) {
-       PyErr_SetString(PyExc_TypeError, "expected sequence type");
-       return NULL;
-    }
-
-    if(!(counts = PyDict_New()))
-       return NULL;
-    
-    /* Go through the loop, counting how often each item appears. */
-    i = 0;
-    while(1) {
-       if(!(item = PySequence_GetItem(items, i)))  {
-            PyErr_Clear(); /* clear the exception set by PySequence_GetItem */
-           break;         /* no more numbers */
-       }
-
-       if(!(count = PyDict_GetItem(counts, item))) {
-           newcount = PyInt_FromLong(1);  /* New item, set count to 1 */
-       }
-       else {
-           current = PyInt_AsLong(count);
-           newcount = PyInt_FromLong(current+1);
-       }
-
-       PyDict_SetItem(counts, item, newcount);
-       Py_DECREF(newcount);
-       Py_DECREF(item);
-       if(PyErr_Occurred()) 
-           return NULL;
-
-       i++;
-    }
-    
-    return counts;
-}
-
-
-static char clistfns_contents__doc__[] = 
-"contents(items) -> dict of item -> percentage\n\
-\n\
-Summarize the contents of the list in terms of the percentages of each\n\
-item.  For example, if an item appears 3 times in a list with 10 items,\n\
-it is in 0.3 of the list\n\
-\n\
-";
-
-static PyObject *clistfns_contents(PyObject *self, PyObject *args)
-{
-    int i;
-    PyObject *items, *counts, *percentages;
-    PyObject *countitems, *countitem;
-    PyObject *key, *count, *perc;
-    long c;
-    double total;
-
-    if(!PyArg_ParseTuple(args, "O", &items))
-       return NULL;
-    if(!PySequence_Check(items)) {
-       PyErr_SetString(PyExc_TypeError, "expected mapping type");
-       return NULL;
-    }
-    if((total = PySequence_Length(items)) == -1) {
-       PyErr_SetString(PyExc_ValueError, "I couldn't get length of item.");
-       return NULL;
-    }
-    
-    counts = clistfns_count(self, args);
-    if(!counts || PyErr_Occurred())
-       return NULL;
-
-    if(!(percentages = PyDict_New())) {
-       Py_DECREF(counts);
-       return NULL;
-    }
-
-    /* Loop through every element in counts, calculating the probabilities. */
-    if(!(countitems = PyMapping_Items(counts))) {
-       Py_DECREF(counts);
-        Py_DECREF(percentages);
-       return NULL;
-    }
-
-    /* Go through the loop, counting how often each item appears. */
-    i = 0;
-    while(1) {
-       if(!(countitem = PyList_GetItem(countitems, i))) {
-           PyErr_Clear(); /* clear the exception set by PyList_GetItem */
-           break;         /* no more numbers */
-        }
-       key = PyTuple_GetItem(countitem, 0);
-       count = PyTuple_GetItem(countitem, 1);
-       c = PyInt_AsLong(count);
-       perc = PyFloat_FromDouble((double)c / total);
-       PyDict_SetItem(percentages, key, perc);
-       Py_DECREF(perc);
-       if(PyErr_Occurred())   /* PyDict_SetItem failed */
-           break;
-       i++;
-    }
-    if(PyErr_Occurred()) {
-       Py_DECREF(percentages);
-       percentages = NULL;
-    }
-    Py_DECREF(countitems);
-    Py_DECREF(counts);
-    
-    return percentages;
-}
-
-
-/************************************** Module definition stuff ******/
-
-static PyMethodDef clistfnsMethods[] = {
-    {"count", clistfns_count, METH_VARARGS, clistfns_count__doc__},
-    {"contents", clistfns_contents, METH_VARARGS, clistfns_contents__doc__},
-    {NULL, NULL}
-};
-
-static char clistfns__doc__[] =
-"This provides helper functions for the listfns module.\n\
-You should never import this module on its own.\n\
-\n\
-";
-
-void initclistfns(void)
-{
-    (void) Py_InitModule3("clistfns", clistfnsMethods, clistfns__doc__);
-}