Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / Makefile.freebsd

diff --git a/website/archive/binaries/mac/src/fasta34/Makefile.freebsd b/website/archive/binaries/mac/src/fasta34/Makefile.freebsd
new file mode 100644 (file)
index 0000000..9d55031
--- /dev/null
+++ b/website/archive/binaries/mac/src/fasta34/Makefile.freebsd
@@ -0,0 +1,65 @@
+#
+# Makefile for building fasta3 on FreeBSD
+#
+# Fernan Aguero - <fernan@iib.unsam.edu.ar>
+
+# we take care of doing variable assignment using the '?=' and '+='
+# operators to preserve the value of variables if they are already
+# defined. In FreeBSD this happens when fasta3 is build from the port or
+# when the user has set these variables -- most notably CC and/or CFLAGS
+# -- in /etc/make.conf
+
+# Compiler executable, and optional flags
+CC?=           gcc
+CFLAGS?=       -g -O2
+
+# your FASTA host
+FASTA_HOST?=   "your_fasta_host"
+
+# common CFLAGS. These are the set of CFLAGS that are always used
+COMMON_CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -c -DMAX_WORKERS=2 \
+               -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -D_REENTRANT \
+               -D_LARGE_FILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO \
+               -DHAS_INTTYPES -DSAMP_STATS
+
+# standard options, these will be added to the common CFLAGS if
+# selected below
+STANDARD_CFLAGS=       -DSFCHAR="':'" -DFASTA_HOST='${FASTA_HOST}' \
+                       -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DPGM_DOC
+
+# options for superfamily validations, these will be added to the common
+# CFLAGS if selected below
+SUPERFAMILY_CFLAGS=    -DSFCHAR="'|'" -DSUPERFAMNUM -DBIG_LIB64
+
+# here we define CFLAGS to be the sum of common flags plus a subset of
+# optional flags that define our intended use.
+# The default standard flags are selected by default, although the user
+# can override this if s/he wants
+CFLAGS+=       ${COMMON_CFLAGS} ${STANDARD_CFLAGS}
+
+XDIR?=         /usr/local/bin
+
+LIB_M+=                -lm
+
+HFLAGS+=       -o
+NFLAGS+=       -o
+
+# FreeBSD users BEWARE! Different threading models ahead!
+
+# The threading model has changed along the way from FreeBSD-4 to
+# FreeBSD-6. If you're building fasta3 on your own, you will need to
+# adjust this accordingly. The default works in FreeBSD-6x (currently
+# the recommended major version for use in production). Or better yet,
+# use the biology/fasta3 port from the ports collection, which will use
+# the correct threading library for your OSVERSION
+
+THR_SUBS?=     pthr_subs2
+THR_LIBS?=     -lpthread
+THR_CC?=       
+
+DROPNFA_O = drop_nfa.o
+DROPGSW_O = dropgsw.o
+DROPRSS_O = dropnsw.o
+DROPTFA_O = drop_tfa.o
+
+include Makefile34m.common