Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / Makefile.hpux_it

diff --git a/website/archive/binaries/mac/src/fasta34/Makefile.hpux_it b/website/archive/binaries/mac/src/fasta34/Makefile.hpux_it
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+#
+# makefile for fasta3, fasta3_t
+#
+# flags for HP-UX #
+
+CC= cc -g -O2 +Onolimit -Wl,+pi,1M -Wl,+pd,1M -Wl,+mergeseg
+#CC = gcc -g -DDEBUG
+
+#CC=gcc -Wall -pedantic -ansi -g -O
+#CC= /usr/local/parasoft/bin.linux2/insure -g -DDEBUG
+
+# EBI uses the following with pgcc, -O3 does not work:
+# CC= pgcc -O2 -pipe -mcpu=pentiumpro -march=pentiumpro -fomit-frame-pointer
+
+# this file works for x86 LINUX
+
+# use options below for superfamily validations
+#CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DSFCHAR="'|'" -c -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DSUPERFAMNUM -DUSE_MMAP -DBIG_LIB64 -D_LARGE_FILE_SOURCE -DUSE_FSEEKO -D_FILE_OFFSET_BITS=64 -DHAS_INTTYPES -DSAMP_STATS
+
+# standard options
+CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DSFCHAR="':'" -c -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"your_fasta_host_here"' -DUSE_MMAP -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC
+# -I/usr/local/include/mysql -DMYSQL_DB 
+#
+#(for mySQL databases)  (also requires change to Makefile34.common)
+
+LIB_M = -lm
+#LIB_M = -L/usr/local/lib/mysql -lmysqlclient -lm
+# for mySQL databases
+
+HFLAGS= -o
+NFLAGS= -o
+
+# for Linux
+THR_SUBS = pthr_subs2
+THR_LIBS = -lpthread
+THR_CC =
+
+XDIR = /seqprg/bin
+
+DROPNFA_O = drop_nfa.o
+DROPGSW_O = dropgsw.o
+DROPRSS_O = dropnsw.o
+DROPTFA_O = drop_tfa.o
+
+# renamed (fasta33)  programs
+include Makefile34m.common
+# conventional (fasta3) names
+# include Makefile.common
+