Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / Makefile.linux_sql

diff --git a/website/archive/binaries/mac/src/fasta34/Makefile.linux_sql b/website/archive/binaries/mac/src/fasta34/Makefile.linux_sql
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+#
+# makefile for fasta3, fasta3_t.  Use makefile.pvm for pvcompxx.
+#
+# On the version of linux that I use, MININT is defined and causes a warning
+# as dropnfa.c is compiled.  Unfortunately, using the Linux definition of
+# MININT causes the code to break. Do not change the MININT definition
+# in dropnfa.c  (wrp 3/19/1998)
+#
+
+
+CC= gcc -g -O
+#CC= gcc -g -DDEBUG
+#CC=/opt/parasoft/bin.linux2/insure -g -DDEBUG
+
+# this file works for x86 LINUX
+
+# standard options
+CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DSFCHAR="':'" -c -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"your_fasta_host_here"' -DUSE_MMAP -D_REENTRANT -I/usr/local/pgsql/include -I/usr/include/mysql -DPGSQL_DB -DMYSQL_DB -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -DHAS_INTTYPES -DSAMP_STATS -DPGM_DOC -DM10_CONS
+
+# use options below for superfamily validations
+#CFLAGS= -DSHOWSIM -DLINUX6 -DUNIX -DTIMES -DHZ=100 -DSFCHAR="'|'" -c -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DSUPERFAMNUM -DUSE_MMAP -D_REENTRANT
+
+# -I/usr/local/include/mysql -DMYSQL_DB 
+#
+#(for mySQL databases)  (also requires change to Makefile34.common)
+
+#LIB_M = -lm
+#LIB_M = -L/usr/lib/mysql -lmysqlclient -lm
+# for mySQL databases
+
+HFLAGS= -o
+NFLAGS= -o
+
+# for Linux
+THR_SUBS = pthr_subs2
+THR_LIBS = -lpthread
+THR_CC =
+
+XDIR = /seqprg/bin
+
+DROPNFA_O = drop_nfa.o
+DROPGSW_O = dropgsw.o
+DROPRSS_O = dropnsw.o
+DROPTFA_O = drop_tfa.o
+
+# renamed (fasta34)  programs
+include Makefile34m.common_sql
+# conventional (fasta3) names
+# include Makefile.common