Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / Makefile.linux_sse2

diff --git a/website/archive/binaries/mac/src/fasta34/Makefile.linux_sse2 b/website/archive/binaries/mac/src/fasta34/Makefile.linux_sse2
new file mode 100644 (file)
index 0000000..9932c3b
--- /dev/null
+++ b/website/archive/binaries/mac/src/fasta34/Makefile.linux_sse2
@@ -0,0 +1,53 @@
+#
+# makefile for fasta3, fasta3_t.  Use makefile.pvm for pvcompxx.
+#
+#
+# Dec 8, 2005 - with gcc4.0.2 (or .1) under Redhat Linux Fedora FC4 -03 breaks the alignment code
+#
+
+CC= gcc -g -O -DSW_SSE2 -msse2
+#CC = gcc -g -DDEBUG -DSW_SSE2 -msse2
+
+#CC=gcc -Wall -pedantic -ansi -g -O
+#CC= /usr/local/parasoft/bin/insure -g -DDEBUG
+
+# EBI uses the following with pgcc, -O3 does not work:
+# CC= pgcc -O2 -pipe -mcpu=pentiumpro -march=pentiumpro -fomit-frame-pointer
+
+# this file works for x86 LINUX
+
+# standard options
+CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DSFCHAR="':'" -c -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"your_fasta_host_here"' -DUSE_MMAP -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC
+
+# use options below for superfamily validations
+#CFLAGS= -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DSFCHAR="'|'" -c -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DSUPERFAMNUM -DUSE_MMAP -D_REENTRANT -DBIG_LIB64 -D_LARGE_FILE_SOURCE -DUSE_FSEEKO -D_FILE_OFFSET_BITS=64 -DHAS_INTTYPES -DSAMP_STATS
+
+# -I/usr/local/include/mysql -DMYSQL_DB 
+#
+#(for mySQL databases)  (also requires change to Makefile34.common)
+
+LIB_M = -lm
+#LIB_M = -L/usr/local/lib/mysql -lmysqlclient -lm
+# for mySQL databases
+
+HFLAGS= -o
+NFLAGS= -o
+
+# for Linux
+THR_SUBS = pthr_subs2
+THR_LIBS = -lpthread
+THR_CC =
+
+XDIR = /seqprg/bin
+#XDIR = ~/bin/LINUX
+
+DROPNFA_O = drop_nfa.o
+DROPTFA_O = drop_tfa.o
+DROPGSW_O = dropgsw.o smith_waterman_sse2.o
+DROPRSS_O = dropgsw.o smith_waterman_sse2.o
+
+# renamed (fasta33)  programs
+include Makefile34m.common
+# conventional (fasta3) names
+# include Makefile.common
+