Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / Makefile.os_x

diff --git a/website/archive/binaries/mac/src/fasta34/Makefile.os_x b/website/archive/binaries/mac/src/fasta34/Makefile.os_x
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+# makefile for fasta3, fasta3_t.  Use makefile.pvm for pvcompxx.
+# this file works for DEC Alphas
+#
+# this file supports mmap()'ed databases in BLAST2 format use -DUSE_MMAP
+# for mmap()ed BLAST2 format.
+
+# the -DDEBUG option provides additional debugging information, particularly
+# with -D on the command line.
+
+# use -DBIG_LIB64 to generate 64-bit offsets in map_db .xin files
+
+# changed to gcc-3.3 for MacOSX Tiger because of problems with Altivec
+#
+
+# in my hands, gcc-4.0 is about 40% slower than gcc-3.3 on the Altivec code
+#CC= gcc-4.0 -g -falign-loops=32 -O3 -mcpu=7450 -maltivec -mpim-altivec -DSW_ALTIVEC
+
+CC= gcc-3.3 -g -falign-loops=32 -O3 -mcpu=7450 -faltivec -DSW_ALTIVEC
+#CC= gcc-3.3 -g -DDEBUG -mcpu=7450 -faltivec -DSW_ALTIVEC
+#CC= cc -g -Wall -pedantic -faltivec -DSW_ALTIVEC
+#
+# standard line for normal searching
+CFLAGS= -DSHOWSIM -DM10_CONS -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"xs00.achs.virginia.edu/fasta_www/cgi"' -DUSE_MMAP -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DPGM_DOC
+
+#CFLAGS= -DSHOWSIM -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DMAX_WORKERS=2 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"xs00.achs.virginia.edu/fasta_www/cgi"' -DUSE_MMAP -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DPGM_DOC -DSUPERFAMNUM -DSFCHAR="'|'"
+
+# add for MySQL support
+# -I/usr/local/mysql/include -DMYSQL_DB
+
+HFLAGS= -o
+NFLAGS= -o
+
+#for DEC Unix V4.0 
+THR_SUBS = pthr_subs2
+THR_LIBS =
+THR_CC =
+
+#for Sun
+#THR_SUBS = uthr_subs2
+#THR_LIBS = -lthread
+#THR_CC =
+#
+# for SGI with current pthreads
+#THR_SUBS = pthr_subs2
+#THR_LIBS = -lpthreads
+#THR_CC = 
+#
+# for IBM with current pthreads
+#CC= xlc_r -v -g
+#THR_SUBS = ibm_pthr_subs2
+#THR_LIBS = -lpthreads
+#THR_CC =
+
+
+#XDIR = ${HOME}/bin
+#XDIR = /home/slib/bin/MACOSX/
+#XDIR = /Users/seqprg/bin
+XDIR = /seqprg/bin
+#XDIR = ./ppc
+
+DROPNFA_O = drop_nfa.o
+DROPTFA_O = drop_tfa.o
+DROPGSW_O = dropgsw.o smith_waterman_altivec.o
+DROPRSS_O = dropgsw.o smith_waterman_altivec.o
+#DROPGSW_O = dropgsw.o
+#DROPRSS_O = dropgsw.o
+
+# provide mysql function
+#include Makefile34m.common_sql
+
+# no mysql
+include Makefile34m.common