Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / Makefile.os_x86

diff --git a/website/archive/binaries/mac/src/fasta34/Makefile.os_x86 b/website/archive/binaries/mac/src/fasta34/Makefile.os_x86
new file mode 100644 (file)
index 0000000..d3b3216
--- /dev/null
+++ b/website/archive/binaries/mac/src/fasta34/Makefile.os_x86
@@ -0,0 +1,69 @@
+# makefile for fasta3, fasta3_t.  Use makefile.pvm for pvcompxx.
+# this file works for DEC Alphas
+#
+# this file supports mmap()'ed databases in BLAST2 format use -DUSE_MMAP
+# for mmap()ed BLAST2 format.
+
+# the -DDEBUG option provides additional debugging information, particularly
+# with -D on the command line.
+
+# use -DBIG_LIB64 to generate 64-bit offsets in map_db .xin files
+
+# changed to gcc-3.3 for MacOSX Tiger because of problems with Altivec
+#
+
+CC= gcc -g -O3 -DSW_SSE2 -msse2 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk 
+#CC= gcc -g -DDEBUG
+#CC= cc -g -Wall -pedantic
+#
+# standard line for normal searching
+CFLAGS= -DSHOWSIM -DM10_CONS -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"xs00.achs.virginia.edu/fasta_www/cgi"' -DIS_LITTLE_ENDIAN -DUSE_MMAP -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DPGM_DOC
+
+#CFLAGS= -DSHOWSIM -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"xs00.achs.virginia.edu/fasta_www/cgi"' -DIS_LITTLE_ENDIAN -DUSE_MMAP -DUSE_FSEEKO -DHAS_INTTYPES -DSAMP_STATS -DPGM_DOC -DSUPERFAMNUM -DSFCHAR="'|'"
+
+LDFLAGS= -arch i386
+
+# add for MySQL support
+# -I/usr/local/mysql/include -DMYSQL_DB
+
+HFLAGS= -o
+NFLAGS= -o
+
+#for DEC Unix V4.0 
+THR_SUBS = pthr_subs2
+THR_LIBS =
+THR_CC =
+
+#for Sun
+#THR_SUBS = uthr_subs2
+#THR_LIBS = -lthread
+#THR_CC =
+#
+# for SGI with current pthreads
+#THR_SUBS = pthr_subs2
+#THR_LIBS = -lpthreads
+#THR_CC = 
+#
+# for IBM with current pthreads
+#CC= xlc_r -v -g
+#THR_SUBS = ibm_pthr_subs2
+#THR_LIBS = -lpthreads
+#THR_CC =
+
+
+#XDIR = ${HOME}/bin
+#XDIR = /home/slib/bin/MACOSX/
+#XDIR = /Users/seqprg/bin
+XDIR = /seqprg/bin
+#XDIR = ./i386
+
+DROPNFA_O = drop_nfa.o
+DROPTFA_O = drop_tfa.o
+DROPGSW_O = dropgsw.o smith_waterman_sse2.o
+DROPRSS_O = dropgsw.o smith_waterman_sse2.o
+
+# provide mysql function
+#include Makefile34m.common_sql
+
+# no mysql
+include Makefile34m.common