Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / Makefile.pLinux

diff --git a/website/archive/binaries/mac/src/fasta34/Makefile.pLinux b/website/archive/binaries/mac/src/fasta34/Makefile.pLinux
new file mode 100644 (file)
index 0000000..b3fa56f
--- /dev/null
+++ b/website/archive/binaries/mac/src/fasta34/Makefile.pLinux
@@ -0,0 +1,76 @@
+# $Name: fa_34_26_5 $ - $Id: Makefile.pLinux,v 1.4 2004/11/19 15:28:26 wrp Exp $
+#
+# makefile for fasta3, fasta3_t.  Use makefile.pvm for pvcompxx.
+# this file works for DEC Alphas
+#
+# this file supports mmap()'ed databases in BLAST2 format use -DUSE_MMAP
+# for mmap()ed BLAST2 format.
+
+# the -DDEBUG option provides additional debugging information, particularly
+# with -D on the command line.
+
+# use -DBIG_LIB64 to generate and use 64-bit offsets in map_db .xin
+# files
+
+# for Tru64 4.0F, no "<inttypes.h>" 4.0G has inttypes.h
+
+CC= xlc_r
+
+#CC= cc -g3 -O -std1
+#CC= insure -g -DDEBUG
+#CC= cc -g -DDEBUG -std1
+
+#CC= gcc -g -Wall
+#
+# standard line for normal searching
+CFLAGS= -O3 -qtune=auto -qarch=auto -DUNIX -DTIMES -DBIGMEM -DMAX_WORKERS=4 -DSFCHAR="':'" -DTHR_EXIT=pthread_exit -DPROGRESS -DUSE_MMAP -DIS_BIG_ENDIAN -DSAMP_STATS -DPGM_DOC -D_LARGE_FILES -DHAS_INTTYPES -D__pLinux__
+#
+#(-DMYSQL_DB for mySQL databases)  (also requires change to Makefile34.common)
+
+# special options for SUPERFAMLIES
+#CFLAGS= -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DBIGMEM -DSFCHAR="'|'" -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DSUPERFAMNUM -DIS_LITTLE_ENDIAN -DUSE_MMAP -DMAXBEST=200000
+ 
+LIB_M = -lm
+#LIB_M = -L/usr/local/lib/mysql -lmysqlclient -lm
+# for mySQL databases
+
+HFLAGS= -o
+NFLAGS= -o
+
+#for DEC Unix V4.0 
+#THR_SUBS = pthr_subs2
+#THR_LIBS = -lpthreads
+#THR_CC =
+
+#for Sun
+#THR_SUBS = uthr_subs
+#THR_LIBS = -lthread
+#THR_CC =
+#
+# for SGI with current pthreads
+#THR_SUBS = pthr_subs
+#THR_LIBS = -lpthreads
+#THR_CC = 
+#
+# for IBM with current pthreads
+#CC= xlc_r -v -g
+#THR_SUBS = ibm_pthr_subs
+#THR_LIBS = -lpthreads
+#THR_CC =
+
+
+# for IBM Linux with current pthreads
+THR_SUBS = pthr_subs2
+THR_LIBS = -lpthread
+
+XDIR = /seqprg/slib/bin
+
+DROPNFA_O = drop_nfa.o
+DROPGSW_O = dropgsw.o
+DROPRSS_O = dropnsw.o
+DROPTFA_O = drop_tfa.o
+
+# renamed (fasta34)  programs
+#include Makefile34m.common_sql
+include Makefile34m.common
+