Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / aln_structs.h

diff --git a/website/archive/binaries/mac/src/fasta34/aln_structs.h b/website/archive/binaries/mac/src/fasta34/aln_structs.h
new file mode 100644 (file)
index 0000000..08d1664
--- /dev/null
+++ b/website/archive/binaries/mac/src/fasta34/aln_structs.h
@@ -0,0 +1,30 @@
+
+#ifndef A_STRUCT
+#define A_STRUCT
+
+struct a_struct {
+  int smin0;           /* coordinate of display start in seqc0 */
+  int smin1;           /* coordinate of display start in seqc1 */
+  int amin0, amax0;    /* coordinate of alignment start in seqc0 */
+  int amin1, amax1;    /* coordinate of alignment start in seqc1 */
+
+  int llen;
+  int llcntx, llcntx_flg, showall;
+
+  int qlrev, qlfact;
+  int llrev, llfact, llmult;
+  int frame;
+
+  int a_len;                   /* consensus alignment length */
+  int nident, nsim, ngap_q, ngap_l, nfs;       /* number of identities, gaps in q, l */
+  long d_start0,d_stop0;
+  long d_start1,d_stop1;
+};
+
+struct a_res_str {
+  int min0, max0;      /* boundaries of alignment in aa0 */
+  int min1, max1;      /* boundaries of alignment in aa1 */
+  int *res;
+  int nres;
+};
+#endif