Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / defs.h

diff --git a/website/archive/binaries/mac/src/fasta34/defs.h b/website/archive/binaries/mac/src/fasta34/defs.h
deleted file mode 100644 (file)
index f0851f5..0000000
--- a/website/archive/binaries/mac/src/fasta34/defs.h
+++ /dev/null
@@ -1,134 +0,0 @@
-/* Concurrent read version */
-
-/* $Name: fa_34_26_5 $ - $Id: defs.h,v 1.26 2006/06/22 02:35:05 wrp Exp $ */
-
-#ifdef SUNOS
-#include <sys/stdtypes.h>
-#endif
-
-#ifndef IS_BIG_ENDIAN
-#if defined(__BIG_ENDIAN__) || defined(_BIG_ENDIAN)
-#define IS_BIG_ENDIAN
-#else
-#undef IS_BIG_ENDIAN
-#endif
-#endif
-
-#if !defined(MAX_WORKERS) && !defined(PCOMPLIB)
-#define MAX_WORKERS 1
-#endif
-
-/* 3-Oct-2003 - we can now have 2 nucleotide query types, DNA
-   and RNA.  pst.dnaseq can also be SEQT_RNA.
-   ldnaseq can only be DNA */
-
-#define SEQT_DNA 1
-#define SEQT_RNA 3     /* DNA and RNA seqtypes must be odd */
-
-#define SEQT_PROT 0
-#define SEQT_UNK -1
-#define SEQT_OTHER 2
-
-#ifndef DEF_NMLEN
-#define DEF_NMLEN 6
-#endif
-
-/* unfortunately, there is an important relationship between MAXTRN and
-   MAXTST+MAXLIB embedded here.  MAXTRN must be >= (MAXTST+MAXLIB)/3
-   or it will be possible for a translated DNA sequence to be longer
-   than the translation space available */
-
-#define MAX_STR        512 /* standard label/message buffer */
-#define MAX_SSTR 32 /* short string */
-#define MAX_FN  120 /* maximum size of a file name */
-#define MAX_CH 40 /* maximum number of library choices */
-#ifndef SMALLMEM
-#define MAX_LF  500 /* maximum numer of library files */
-#else
-#define MAX_LF  80 /* maximum numer of library files */
-#endif
-
-/* padding at the end of sequences for ALTIVEC, other vector
-   processors */
-#define SEQ_PAD 16
-
-#define MAX_UID 20 /* length of libstr, used for character keys with SQL */
-
-#define AVE_AA_LEN 400
-#define AVE_NT_LEN 5000
-#define MAX_AA_BUF 5000                /* 5000 later */
-#define MAX_NT_BUF 1000                /* 2000 later */
-
-#ifndef SMALLMEM
-#define MAXTST 40000           /* longest query */
-#define MAXLIB 120000          /* longest library */
-#define MAXPLIB        600000          /* longest library with p_comp* */
-#define MIN_RES 2000           /* minimum amount allocated for alignment */
-#ifndef TFAST
-#define MAXTRN  80000          /* buffer for fastx translation */
-#else
-#define MAXTRN 180000          /* buffer for tfastx translation */
-#endif
-#define SEQDUP 1200            /* future - overlap */
-#ifndef PCOMPLIB
-#ifndef MAXBEST
-#define MAXBEST        60000   /* max number of best scores */
-#endif
-#define MAXSTATS 60000
-#else
-#ifndef MAXBEST
-#define MAXBEST        60000   /* max number of best scores */
-#endif
-#define MAXSTATS 60000
-#endif
-#define BIGNUM  1000000000
-#ifndef MAXINT
-#define MAXINT 2147483647
-#endif
-#define MAXLN  120     /* size of a library name */
-#else
-#define MAXTST 1500
-#define MAXLIB 10000
-#define MAXPLIB        100000          /* longest library with p_comp* */
-#define MIN_RES 1000
-#ifndef TFAST
-#define MAXTRN  6000
-#else
-#define MAXTRN 11500
-#endif
-#define SEQDUP 300
-#define MAXBEST 2000
-#define MAXSTATS 20000
-#define BIGNUM  32767
-#define MAXINT  32767
-#define MAXLN  40      /* size of a library name */
-#endif
-#if !defined(TFAST)
-#define MAXTOT (MAXTST+MAXLIB)
-#define MAXDIAG        (MAXTST+MAXLIB)
-#else
-#define MAXTOT (MAXTST+MAXTRN)
-#define MAXDIAG        (MAXTST+MAXTRN)
-#endif
-
-#define MAXPAM 600     /* maximum allowable size of the pam matrix */
-#define PROF_MAX 500
-#define ALF_MAX 30
-
-#ifdef SUPERFAMNUM
-#define NSFCHAR '!'
-#endif
-
-#define max(a,b) (((a) > (b)) ? (a) : (b))
-#define min(a,b) (((a) < (b)) ? (a) : (b))
-
-#define MX_ATYPE 7     /* markx==0,1,2 7=> no alignment */
-#define MX_ASEP  8     /* markx==3  - separate lines */
-#define MX_AMAP  16    /* markx==4,5 - graphic map */
-#define MX_HTML  32    /* markx==6  - HTML */
-#define MX_M9SUMM 64   /* markx==9(c) */
-#define MX_M10FORM 128 /* markx==10 */
-
-/* codes for -m 9 */
-#define SHOW_CODE_ID   1       /* identity only */
-#define SHOW_CODE_ALIGN 2      /* encoded alignment */