Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / drop_func.h

diff --git a/website/archive/binaries/mac/src/fasta34/drop_func.h b/website/archive/binaries/mac/src/fasta34/drop_func.h
deleted file mode 100644 (file)
index d55763a..0000000
--- a/website/archive/binaries/mac/src/fasta34/drop_func.h
+++ /dev/null
@@ -1,143 +0,0 @@
-/* drop_func.h */
-
-/* $Name: fa_34_26_5 $ - $Id: drop_func.h,v 1.7 2006/05/31 15:31:45 wrp Exp $ */
-
-/* functions provided by each of the drop files */
-
-/* Copyright (c) 2005 William R. Pearson and the University of Virginia */
-
-
-void   /* initializes f_struct **f_arg */
-init_work (unsigned char *aa0, int n0,
-          struct pstruct *ppst,
-#ifndef DROP_INTERN
-          void **f_arg
-#else
-          struct f_struct **f_arg
-#endif
-);
-
-
-void   /* frees memory allocated in f_struct */
-close_work (const unsigned char *aa0, int n0,
-           struct pstruct *ppst,
-#ifndef DROP_INTERN
-          void **f_arg
-#else
-          struct f_struct **f_arg
-#endif
-);
-
-void   /* documents search function, parameters */
-get_param (struct pstruct *pstr, char *pstring1, char *pstring2);
-
-void   /* calculates alignment score(s), returns them in rst */
-do_work (const unsigned char *aa0, int n0,
-        const unsigned char *aa1, int n1,
-        int frame,
-        struct pstruct *ppst,
-#ifndef DROP_INTERN
-        void *f_arg,
-#else
-        struct f_struct *f_arg,
-#endif
-        int qr_flg, struct rstruct *rst);
-
-void   /* calculates optimal alignment score */
-do_opt (const unsigned char *aa0, int n0,
-       const unsigned char *aa1, int n1,
-       int frame,
-       struct pstruct *ppst,
-#ifndef DROP_INTERN
-       void *f_arg,
-#else
-       struct f_struct *f_arg,
-#endif
-       struct rstruct *rst
-       );
-
-int    /* produces encoding of alignment */
-do_walign (const unsigned char *aa0, int n0,
-          const unsigned char *aa1, int n1,
-          int frame,
-          struct pstruct *ppst, 
-#ifndef DROP_INTERN
-          void *f_arg,
-#else
-          struct f_struct *f_arg,
-#endif
-          struct a_res_str *a_res,
-          int *have_ares);
-
-void
-pre_cons(const unsigned char *aa, int n, int frame, 
-#ifndef DROP_INTERN
-          void *f_arg
-#else
-          struct f_struct *f_arg
-#endif
-       );
-
-void 
-aln_func_vals(int frame, struct a_struct *aln);
-
-int    /* takes aa0, aa1, a_res, and produces seqc0, seqc1 */
-calcons(const unsigned char *aa0, int n0,
-       const unsigned char *aa1, int n1,
-       int *nc,
-       struct a_struct *aln,           /* seqc0/seqc1 coordinates */
-       struct a_res_str a_res,         /* aa0,aa1, coord, inc. res, nres */
-       struct pstruct pst,
-       char *seqc0, char *seqc1, char *seqca,
-#ifndef DROP_INTERN
-       void *f_arg
-#else
-       struct f_struct *f_arg
-#endif
-       );
-
-/* calcons_a - takes aa0, aa1, a_res, and produces seqc0, seqc1, 
- *             and seqc0a, seqc1a - the annotated sequences 
- */
-int
-calcons_a(const unsigned char *aa0, unsigned char *aa0a, int n0,
-         const unsigned char *aa1, int n1,
-         int *nc,
-         struct a_struct *aln,
-         struct a_res_str a_res,
-         struct pstruct pst,
-         char *seqc0, char *seqc0a, char *seqc1, char *seqca,
-         char *ann_arr,
-#ifndef DROP_INTERN
-         void *f_arg
-#else
-         struct f_struct *f_arg
-#endif
-         );
-
-int    /* returns lenc - length of aligment */
-calc_code(const unsigned char *aa0, int n0,
-         const unsigned char *aa1, int n1,
-         struct a_struct *aln,
-         struct a_res_str a_res,
-         struct pstruct pst,
-         char *al_str, int al_str_n,
-#ifndef DROP_INTERN
-         void *f_arg
-#else
-         struct f_struct *f_arg
-#endif
-         );
-
-int    /* returns lenc - length of alignment */
-calc_id(const unsigned char *aa0, int n0,
-       const unsigned char *aa1, int n1,
-       struct a_struct *aln, 
-       struct a_res_str a_res,
-       struct pstruct pst,
-#ifndef DROP_INTERN
-       void *f_arg
-#else
-       struct f_struct *f_arg
-#endif
-       );