Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / dropnfa.h

diff --git a/website/archive/binaries/mac/src/fasta34/dropnfa.h b/website/archive/binaries/mac/src/fasta34/dropnfa.h
deleted file mode 100644 (file)
index b7082c0..0000000
--- a/website/archive/binaries/mac/src/fasta34/dropnfa.h
+++ /dev/null
@@ -1,74 +0,0 @@
-
-/* global definitions shared by dropnfa.c and altivec.c */
-
-#ifndef MAXSAV
-#define MAXSAV 10
-#endif
-
-
-
-struct dstruct         /* diagonal structure for saving current run */
-{                      
-   int     score;      /* hash score of current match */
-   int     start;      /* start of current match */
-   int     stop;       /* end of current match */
-   struct savestr *dmax;   /* location in vmax[] where best score data saved */
-};
-
-struct savestr
-{
-   int     score;              /* pam score with segment optimization */
-   int     score0;             /* pam score of best single segment */
-   int     gscore;             /* score from global match */
-   int     dp;                 /* diagonal of match */
-   int     start;              /* start of match in lib seq */
-   int     stop;               /* end of match in lib seq */
-};
-
-struct bdstr { int CC, DD, CP, DP;};
-
-struct f_struct {
-  struct dstruct *diag;
-  struct savestr vmax[MAXSAV]; /* best matches saved for one sequence */
-  struct savestr *vptr[MAXSAV];
-  struct savestr *lowmax;
-  int ndo;
-  int noff;
-  int hmask;                   /* hash constants */
-  int *pamh1;                  /* pam based array */
-  int *pamh2;                  /* pam based kfact array */
-  int *link, *harr;            /* hash arrays */
-  int kshft;                   /* shift width */
-  int nsav, lowscor;           /* number of saved runs, worst saved run */
-#ifdef TFASTA
-  unsigned char *aa1x;
-  int n10;
-#endif
-  struct bdstr *bss;
-  struct swstr *ss;
-  struct swstr *f_ss, *r_ss;
-  int *waa0;
-  int *waa1;
-  int *res;
-  int max_res;
-  double aa0_f[MAXSQ];
-  double *kar_p;
- 
-#ifdef FA_ALTIVEC
-  int vec_len;
-  vecInt **vec_matrix;
-  vector signed ALTIVEC_SIZE *vec_HH;
-  vector signed ALTIVEC_SIZE *vec_EE;
-
-  int vec_len2;
-  vecInt2 **vec_matrix2;
-  vector signed ALTIVEC_SIZE2 *vec_HH2;
-  vector signed ALTIVEC_SIZE2 *vec_EE2;
-#endif
-};
-
-static int
-FLOCAL_ALIGN(const unsigned char *A, const unsigned char *B,
-            int M, int N, int low, int up,
-            int **W, int G,int H, int MW,
-            struct f_struct *f_str);