+++ /dev/null
-#pgm mol matrix g_open g_ext fr_shft e_cut ktup
-# -n/-p -s -e -f -h/-j -E argv[3]
-fasta prot bl50 -10 -2 - 10.0 2
-fasta dna +5/-4 -14 -4 - 2.0 6
-ssearch prot bl50 -10 -2 - 10.0 -
-ssearch dna +5/-4 -14 -4 - 2.0 -
-fastx prot BL50 -12 -2 -20 5.0 2
-fasty prot BL50 -12 -2 -20/-24 5.0 2
-tfastx dna BL50 -14 -2 -20 5.0 2
-tfasty dna BL50 -14 -2 -20/-24 5.0 2
-fasts prot MD20-MS - - - 5.0 -
-tfasts prot MD10-MS - - - 2.0 -
-fastf prot MD20 - - - 5.0 -
-tfastf prot MD10 - - - 2.0 -
-fastm prot MD20 - - - 5.0 -
-tfastm prot MD10 - - - 2.0 -