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[jabaws.git] / website / archive / binaries / mac / src / fasta34 / map_db.1

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-.TH MAP_DB "September, 1999"
-.SH NAME
-.B map_db
-\- read a FASTA (0), GENBANK flat file (1) PIR/VMS (5) or GCG binary
-(6) sequence database and produce the offsets necessary for efficient
-memory mapping.
-.SH SYNOPSIS
-.B map_db
-[-n] filename | "filename libtype"
-.SH DESCRIPTION
-.B map_db
-.I filename
-reads the sequence database in
-.I filename
-and produce a new file
-.I filename.xin
-with the offset information necessary for efficient memory mapping.
-.LP
-The programs in fasta version 32t08 can use memory mapped i/o to load
-sequence database files and read them efficiently.  Memory mapping is
-used only if a "\c
-.I .xin\c
-\&" file is available.  The "\c
-.I .xin\c
-\&" file is created by
-.B map_db\c
-\&.
-.LP
-In addition to
-.B map_db\c
-\&,
-.B list_db
-is available to display the database size, etc, and set of offsets calculated
-by
-.B map_db\c
-\&.
-.SH OPTIONS
-.TP
-\-n 
-Read file as DNA database.
-.SH BUGS
-.SH AUTHOR
-Bill Pearson
-.br
-wrp@virginia.EDU