Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / re_getlib.c

diff --git a/website/archive/binaries/mac/src/fasta34/re_getlib.c b/website/archive/binaries/mac/src/fasta34/re_getlib.c
deleted file mode 100644 (file)
index e53951b..0000000
--- a/website/archive/binaries/mac/src/fasta34/re_getlib.c
+++ /dev/null
@@ -1,59 +0,0 @@
-/* re_getlib.c - re-acquire a sequence given lseek, lcont */
-
-#include <stdio.h>
-#include <stdlib.h>
-#include <string.h>
-
-#include "defs.h"
-#include "mm_file.h"
-
-#define GETLIB (m_fptr->getlib)
-
-int
-re_getlib(unsigned char *aa1,
-         int maxn,     /* longest aa1 */
-         int maxt3,    /* alternate maxn */
-         int loff,     /* overlap */
-         int lcont,
-         int term_code,
-         long *loffset,        /* offset from real start of sequence */
-         long *l_off_p,        /* coordinate of sequence start */
-         struct lmf_str *m_fptr) {
-
-  unsigned char *aa1ptr;
-  int icont, maxt, ccont, n1;
-  char libstr[20];
-  fseek_t lmark; 
-  
-  aa1ptr = aa1;
-  icont=0;
-
-  *loffset = 0l;
-  maxt = maxn;
-  n1 = -1;
-  for (ccont=0; ccont<=lcont-1; ccont++) {
-
-    n1= GETLIB(aa1ptr,maxt,libstr,sizeof(libstr),&lmark,&icont,m_fptr,l_off_p);
-
-    if (term_code && m_fptr->lib_aa && aa1ptr[n1-1]!=term_code) {
-      aa1ptr[n1++]=term_code;
-      aa1ptr[n1]=0;
-    }
-
-    if (aa1ptr!=aa1) n1 += loff;
-
-    if (icont>lcont-1) break;
-
-    if (icont) {
-      maxt = maxt3;
-      memcpy(aa1,&aa1[n1-loff],loff);
-      aa1ptr= &aa1[loff];
-      *loffset += n1 - loff;
-    }
-    else {
-      maxt = maxn;
-      aa1ptr=aa1;
-    }
-  }
-  return n1;
-}